View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_32 (Length: 326)
Name: NF0718_low_32
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 83 - 316
Target Start/End: Original strand, 33908502 - 33908735
Alignment:
| Q |
83 |
atggacatcatcaacatatcctggttcaagtcttctaggacagaaattgtcagtgtgtcccataattccacagatgtaacagaaaacacctagtctctca |
182 |
Q |
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| T |
33908502 |
atggacaccatcaacatatcctggttcaagtcttctaggacagaaattgtcagtgtgtcccataattccacagatgtaacagaaaacacctagtctctca |
33908601 |
T |
|
| Q |
183 |
tatttgaaagagacattgactgtagtaccatcctccttttcaaagaccatacttctcctcaatggttcagctgtgttgagagctactcgaatccgcatgt |
282 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33908602 |
tatttgaaagagacattgactgcagtaccatcctccttctcaaagaccatacttctcctcaatggttcagctgtgttgagagctactcgaatccgcatgt |
33908701 |
T |
|
| Q |
283 |
acattctctaggggccatagtagttactttcatc |
316 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
33908702 |
acattctccaggggccatagtagttactttcatc |
33908735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 83 - 316
Target Start/End: Original strand, 23269241 - 23269473
Alignment:
| Q |
83 |
atggacatcatcaacatatcctggttcaagtcttctaggacagaaattgtcagtgtgtcccataattccacagatgtaacagaaaacacctagtctctca |
182 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
23269241 |
atggacaccatcaacatatcctggttcaagtcttctaggacaaaaattgtcagtctgtcccattattccacagatgtaacagaatacacctagtctctca |
23269340 |
T |
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| Q |
183 |
tatttgaaagagacattgactgtagtaccatcctccttttcaaagaccatacttctcctcaatggttcagctgtgttgagagctactcgaatccgcatgt |
282 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
23269341 |
tatttgaaagagacattgactacagtaccatcctccttctcaaagaccatgcttctcctcaatgtttcaacaatgttgagagctactcgaatccgcatgt |
23269440 |
T |
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| Q |
283 |
acattctctaggggccatagtagttactttcatc |
316 |
Q |
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|||||||| | ||||||||||||||||||||||| |
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| T |
23269441 |
acattctcca-gggccatagtagttactttcatc |
23269473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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