View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_37 (Length: 316)
Name: NF0718_low_37
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_37 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 9805045 - 9805341
Alignment:
| Q |
1 |
atttattatccacagatggatttcttatactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
9805045 |
atttattatccacacatggatttcttatactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcaccagtgcttttcattttgttc |
9805144 |
T |
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| Q |
101 |
aacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatat |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9805145 |
aacaagaattccttttccctttgatgcattcctatgtacaaaaatttaatataaaatgtgtactagaagtaaatagaaaataacaaatacaagtacatat |
9805244 |
T |
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| Q |
201 |
tttaataaccgaataaaacaaaaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcgatgatgtc |
297 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
9805245 |
tttaataaccgaataaaaaaaaaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttgtcctgttcaatgatgtc |
9805341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9817970 - 9818211
Alignment:
| Q |
1 |
atttattatccacagatggatttcttat--actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgt |
98 |
Q |
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| T |
9817970 |
atttattatctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcactagtgcttttcattttgt |
9818069 |
T |
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| Q |
99 |
tcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacat |
198 |
Q |
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| T |
9818070 |
tcaacaagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtactagaagtaaatagaaaataacaaatacaagtacat |
9818169 |
T |
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| Q |
199 |
attttaataaccgaataaaacaa--aaatcacaatatacctt |
238 |
Q |
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| T |
9818170 |
aatttaataaccgtataaaaaaaataaatcacaatatacctt |
9818211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 297
Target Start/End: Complemental strand, 9806718 - 9806455
Alignment:
| Q |
28 |
tactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttcccttt |
122 |
Q |
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|||||||||||||||||| |||||||| ||| || ||||||||| ||| || | ||| || ||||||||||||||||| ||||||||||||||| |
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| T |
9806718 |
tactcttcaaattccccaccttactttcggg-aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt- |
9806621 |
T |
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| Q |
123 |
gatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa |
222 |
Q |
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||||||||||||| || |||||||||||| ||||| |||||| |||||||||| |||||||||||||| ||||||| | ||||| ||| |
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| T |
9806620 |
-----------gtgtacaaaaattaaatataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaa |
9806532 |
T |
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| Q |
223 |
--aatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcgatgatgtc |
297 |
Q |
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||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| || ||||| |||||||| |
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| T |
9806531 |
taaatcacaatataccttgattctcccttttcgtgagcacgtgaaataccttccatcttgtcttgttcaatgatgtc |
9806455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 300
Target Start/End: Original strand, 12009 - 12285
Alignment:
| Q |
28 |
tactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttcccttt |
122 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||| |
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| T |
12009 |
tactcttcaaattccccatcttactttaggg-aagagtcttcctcgttatcactagtggcatccttttcattttgttcaacaagaattccttctcccttc |
12107 |
T |
|
| Q |
123 |
gatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa- |
221 |
Q |
| |
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| |||||| |||||| ||||||||| |||||||| |||||||||||||||| |||||||||| | ||||||||| || ||||||| | ||||| || |
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| T |
12108 |
gctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataacaaacataagtacataattgaataaccaactaaaaaaat |
12206 |
T |
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| Q |
222 |
aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcgatgatgtccat |
300 |
Q |
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||||||||| |||| ||||||| |||||||| ||||||||| ||||||||||||||| || || || ||||||||||| |
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| T |
12207 |
aaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatcttgtcatgatcaatgatgtccat |
12285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
181 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
272 |
Q |
| |
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||||||| | ||||| |||||| ||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||| |||||||| |
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| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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