View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_38 (Length: 316)
Name: NF0718_low_38
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_38 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 9805069 - 9804766
Alignment:
| Q |
1 |
agaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattaga |
100 |
Q |
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| T |
9805069 |
agaaatccatgtgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttga |
9804970 |
T |
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| Q |
101 |
gaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaac |
200 |
Q |
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| T |
9804969 |
gaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaac |
9804871 |
T |
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| Q |
201 |
tccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgat-gatgtcca |
299 |
Q |
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| T |
9804870 |
tccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcga |
9804771 |
T |
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| Q |
300 |
tctca |
304 |
Q |
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||||| |
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| T |
9804770 |
tctca |
9804766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9817994 - 9817777
Alignment:
| Q |
1 |
agaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattaga |
100 |
Q |
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| T |
9817994 |
agaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcaga |
9817895 |
T |
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| Q |
101 |
gaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaac |
200 |
Q |
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| T |
9817894 |
gaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggttgaagtttcatgaaaat |
9817797 |
T |
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| Q |
201 |
tccatcaaaagagataacca |
220 |
Q |
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| T |
9817796 |
tccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9806742 - 9806792
Alignment:
| Q |
19 |
aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa |
69 |
Q |
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| T |
9806742 |
aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa |
9806792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 11987 - 11788
Alignment:
| Q |
17 |
ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat |
116 |
Q |
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| T |
11987 |
ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat |
11888 |
T |
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| Q |
117 |
gatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
215 |
Q |
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| T |
11887 |
tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
11790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
66 |
gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
165 |
Q |
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||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
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| Q |
166 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
220 |
Q |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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