View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_39 (Length: 309)

Name: NF0718_low_39
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_39
NF0718_low_39
[»] chr5 (4 HSPs)
chr5 (29-288)||(13473185-13473444)
chr5 (155-204)||(24300871-24300920)
chr5 (155-204)||(24372395-24372444)
chr5 (145-193)||(6291670-6291718)
[»] chr8 (1 HSPs)
chr8 (49-234)||(16952479-16952667)
[»] chr1 (2 HSPs)
chr1 (150-202)||(44382624-44382676)
chr1 (154-204)||(3584330-3584380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (135-204)||(11569-11638)
[»] chr3 (2 HSPs)
chr3 (139-202)||(51046809-51046872)
chr3 (154-206)||(24409258-24409310)
[»] chr6 (1 HSPs)
chr6 (138-208)||(7779871-7779941)
[»] chr7 (1 HSPs)
chr7 (135-191)||(1555236-1555292)
[»] chr2 (1 HSPs)
chr2 (138-194)||(14825032-14825088)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 13473185 - 13473444
Alignment:
Q  29 atacttaaaattaacgagtatcaacgatattatttaaaaacaaaaacacatgacccttctcatatttacaactaacatggtgaatgtattgatttcggat 128  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13473185 atacttaaaattaatgagtatcaacgatattatttataaacaaaaacacacgacccttctcatatttacaactaacatggtgaatgtattgatttcggat 13473284  T
Q  129 ataagatatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacact 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13473285 ataagatatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagttgtcaacaactatcact 13473384  T
Q  229 aagaaataacatatgtcgtttgagttttaaacaatttttaagtattagtccttgatgatg 288  Q
    || |||||||||| ||||||||| ||||||||||||||||||||  |||||| |||||||    
T  13473385 aaaaaataacatacgtcgtttgaattttaaacaatttttaagtaacagtcctcgatgatg 13473444  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 24300920 - 24300871
Alignment:
Q  155 ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 204  Q
    ||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  24300920 ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga 24300871  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 24372395 - 24372444
Alignment:
Q  155 ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 204  Q
    ||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  24372395 ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga 24372444  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 6291670 - 6291718
Alignment:
Q  145 ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaat 193  Q
    |||| ||| ||||||||||||  ||| ||||||||||||||||||||||    
T  6291670 ttttatgttgttttaatcaaaatgatatcaattaaatcattatttcaat 6291718  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 16952667 - 16952479
Alignment:
Q  49 tcaacgatattatttaaaaacaaaaacacatgacccttctcatatttacaactaacatggtgaatgtattgatttcgg----atataagatatatattta 144  Q
    ||||||||| |||| ||||| |||| ||||||| |||| ||||||||||  |||| ||||||| |  |||||| ||||    |||  || || |||||||    
T  16952667 tcaacgatactattgaaaaataaaa-cacatgatccttttcatatttacggctaagatggtgacttgattgatatcggttcaataggagctacatattta 16952569  T
Q  145 ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaa 234  Q
    ||||| || ||||||||||||||| |||||||||| ||| |||||||||| ||||||||| |||  || | |||| ||| ||||||||||    
T  16952568 ttttccgttgttttaatcaaaccggtttcaattaagtcactatttcaatcttaaaaatgaggaggatcattaacatctatcactaagaaa 16952479  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 44382624 - 44382676
Alignment:
Q  150 tgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat 202  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||||||||    
T  44382624 tgtcgttatgatcaaactgatatcaattaaatcattatttcaatcataaaaat 44382676  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 3584330 - 3584380
Alignment:
Q  154 gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 204  Q
    ||||||||||||| | | ||||||||||||||||||||||| |||||||||    
T  3584330 gttttaatcaaactggtatcaattaaatcattatttcaatcttaaaaatga 3584380  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 11569 - 11638
Alignment:
Q  135 tatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 204  Q
    |||||||||||||||  | ||||||||| || | || |||| ||||| ||||||||||||||||||||||    
T  11569 tatatatttattttccattgttttaatccaatctatatcaaataaattattatttcaatcataaaaatga 11638  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 51046809 - 51046872
Alignment:
Q  139 tatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat 202  Q
    |||||| ||| ||| ||||||||||||  |||  |||||||||||||||||||||| |||||||    
T  51046809 tatttagtttttgttgttttaatcaaattgataacaattaaatcattatttcaatcgtaaaaat 51046872  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 24409310 - 24409258
Alignment:
Q  154 gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaag 206  Q
    |||||||||||||  || |||||||||||||||||| |||| ||||| |||||    
T  24409310 gttttaatcaaactaatatcaattaaatcattatttgaatcttaaaattgaag 24409258  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 7779871 - 7779941
Alignment:
Q  138 atatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagag 208  Q
    ||||||||||||  | ||||||||||||  ||| ||| |||| |||||||||||||| ||||||| |||||    
T  7779871 atatttattttccatagttttaatcaaattgatatcagttaagtcattatttcaatcgtaaaaataaagag 7779941  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 1555236 - 1555292
Alignment:
Q  135 tatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttca 191  Q
    |||||||||||||| | | ||||||||||||||||| ||| |||| | |||||||||    
T  1555236 tatatatttattttttcttgttttaatcaaaccgatgtcatttaatttattatttca 1555292  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 14825088 - 14825032
Alignment:
Q  138 atatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatc 194  Q
    ||||||||||| ||| | ||||||||||| ||| ||||| |||| ||||||||||||    
T  14825088 atatttattttatgttggtttaatcaaactgatatcaatcaaataattatttcaatc 14825032  T

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