View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_40 (Length: 308)
Name: NF0718_low_40
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 15525275 - 15525005
Alignment:
| Q |
30 |
gaggtatcctcgcattactaatttgtttcattattgtgtgccagatatcagttatga------atgttccattgtatgtttatcctattctagattcaat |
123 |
Q |
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| T |
15525275 |
gaggtatcctcgcattaataatttgtttcattattgtgtgccagatatcagttatgattatgaatgttccattgtatgtttatcctattttagattcaat |
15525176 |
T |
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| Q |
124 |
gctttaagtacaatggttaaactattcttgaataattgaacaaacgcttgttgcatctcgcagcatgttattgttgatttgaatctgcggatacaacacc |
223 |
Q |
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| T |
15525175 |
gctttaagtacaatggttaaactgttcttgaataattgaacaaacgcttgttgcatctcgcagcatgttattgttgatttgaatctgcggatacaacacc |
15525076 |
T |
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| Q |
224 |
taagtcaagcactacagcaggtacttgatctagaatcggaggatatacctcttacgagggatgtgatgatg |
294 |
Q |
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| T |
15525075 |
taagtcaagcactacagcaggtacttgatctagaaacggaggatatacctcttacgagggatgtgatgatg |
15525005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 15544778 - 15544628
Alignment:
| Q |
79 |
agttatgaatgttccattgtatgtttatcctattctagattcaatgctttaagtacaatggttaaactattcttgaataattgaacaaacgcttgttgca |
178 |
Q |
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|||| ||||||||||||| ||||||||| ||||| ||| |||||||||||| ||| |||||| | ||| | |||||||||||||| |||||||||| |
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| T |
15544778 |
agttttgaatgttccattttatgtttatgctattatagtttcaatgctttat----aatagttaaattgttcataaataattgaacaaaagcttgttgca |
15544683 |
T |
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| Q |
179 |
tctcgcagcatgttattgttgatttgaatctgcggatacaacacctaagtcaagc |
233 |
Q |
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| T |
15544682 |
tcttgcagcatgttattgatgatttgagccagcggacacgacgcctaagtcaagc |
15544628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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