View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_47 (Length: 296)
Name: NF0718_low_47
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 27693207 - 27693008
Alignment:
| Q |
1 |
agtgctctcatggactgctgtaaaatttgtttttggctcaccattcgtggttgcggtcttgatatgtaaatggagnnnnnnncatttatctatagatgac |
100 |
Q |
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| T |
27693207 |
agtgctctcatggactgctgtaaaatttgtttttgggtcaccattcgtggttgcggtcttgatatgtaaatggagaaaaaaacatttatctatagatgac |
27693108 |
T |
|
| Q |
101 |
atggttgaggattttattcagagtcacaacaatttcatgcccataaggtactcttactctcaaattaaaactatgaccaaacatttcaaacataagttgg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693107 |
atggttgaagattttattcagagtcacaacaatttcatgcccataaggtactcttactctcaaattaaaactatgaccaaacatttcaaacataagttgg |
27693008 |
T |
|
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