View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_48 (Length: 289)

Name: NF0718_low_48
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_48
NF0718_low_48
[»] chr3 (2 HSPs)
chr3 (1-128)||(21254898-21255025)
chr3 (1-124)||(19200406-19200529)
[»] chr5 (1 HSPs)
chr5 (1-120)||(10176689-10176807)
[»] chr2 (2 HSPs)
chr2 (1-69)||(34896775-34896843)
chr2 (4-92)||(34134256-34134341)
[»] chr8 (2 HSPs)
chr8 (1-116)||(12518442-12518557)
chr8 (13-63)||(6228781-6228830)
[»] chr6 (1 HSPs)
chr6 (16-69)||(15937863-15937916)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21255025 - 21254898
Alignment:
Q  1 gtgctccttatttgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttttcattgttgaagtatgatgatattaacccat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| | ||||||||||||||| |||||||||||| ||||| |    
T  21255025 gtgctccttatttgatgataaatttgggtatgttaaattgatgttaagcttgttgttgttggttgtttttcattgttgatgtatgatgatatgaaccctt 21254926  T
Q  101 tgtgatttttgcttaatttgatgagaaa 128  Q
    ||| ||||||||||||||||||||||||    
T  21254925 tgttatttttgcttaatttgatgagaaa 21254898  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 19200406 - 19200529
Alignment:
Q  1 gtgctccttatttgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttttcattgttgaagtatgatgatattaacccat 100  Q
    |||||| ||||| |||||  | |||||||||||| |||||||| |||  ||||| ||  |||| | ||||||||||||||||||||  |||||||| | |    
T  19200406 gtgctctttattagatgaagaatttgggtatgttgaattgatgataaaattgttgttgatgtttgattttcattgttgaagtatgaaaatattaacactt 19200505  T
Q  101 tgtgatttttgcttaatttgatga 124  Q
    ||||| |||||||||| |||||||    
T  19200506 tgtgaattttgcttaagttgatga 19200529  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10176689 - 10176807
Alignment:
Q  1 gtgctccttatttgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttttcattgttgaagtatgatgatattaacccat 100  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| || |||||| |||| ||| ||||||||||| | |||| || || |    
T  10176689 gtgctccttatttaatgataaatttgggtatgttaatttgatgttaagtttgttgttgttgttgattttccatggttgaagtatgctaatatgaa-cctt 10176787  T
Q  101 tgtgatttttgcttaatttg 120  Q
    ||||| ||||||||||||||    
T  10176788 tgtgagttttgcttaatttg 10176807  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34896775 - 34896843
Alignment:
Q  1 gtgctccttatttgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||    
T  34896775 gtgctccttatttgatgataagtttgggtatgttaaattgatgttaagtttgttgttgttgttgatttt 34896843  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 34134256 - 34134341
Alignment:
Q  4 ctccttatttgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttttcattgttgaagtatgatgatat 92  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||   || |||||| |||| ||| ||||||||||||| ||||    
T  34134256 ctccttatttgatgataagtttgggtatgttaaattgatgctaagcttg---ttgttgttgattttccatggttgaagtatgataatat 34134341  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12518557 - 12518442
Alignment:
Q  1 gtgctccttatttgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttttcattgttgaagtatgatgatattaacccat 100  Q
    |||||||||  ||||| ||||| ||||| |||||||||||||| ||||  | || ||||||||| |||| ||| ||  ||||||||| |||| ||||  |    
T  12518557 gtgctccttccttgataataagattgggcatgttaaattgatgctaagtattttttttttgttgattttccatggtcaaagtatgataatatgaaccttt 12518458  T
Q  101 tgtgatttttgcttaa 116  Q
    || |||||||||||||    
T  12518457 tgcgatttttgcttaa 12518442  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 6228781 - 6228830
Alignment:
Q  13 tgatgataagtttgggtatgttaaattgatgttaagcttgttatttttgtt 63  Q
    |||||||||||||| |||||||||||| |||||||||||||| || |||||    
T  6228781 tgatgataagtttgagtatgttaaatt-atgttaagcttgttgttgttgtt 6228830  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 15937863 - 15937916
Alignment:
Q  16 tgataagtttgggtatgttaaattgatgttaagcttgttatttttgttggtttt 69  Q
    |||||||||||||||||||||||||||||||  |||||| || |||||| ||||    
T  15937863 tgataagtttgggtatgttaaattgatgttagacttgttgttgttgttgatttt 15937916  T

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