View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_51 (Length: 285)
Name: NF0718_low_51
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 31074602 - 31074791
Alignment:
| Q |
46 |
catcatctctacctcatcactcttacaaccatcaatttcattacctatagtctgaacactcttataagtatacctctttgctaagaagagataagcacac |
145 |
Q |
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| T |
31074602 |
catcatctctacctcatcactcttacaaccatcagtttcattacctatcttctgaacactcttataagtatacctctttgctaagaagagataagcacac |
31074701 |
T |
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| Q |
146 |
aaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattc |
235 |
Q |
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| T |
31074702 |
aaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattc |
31074791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 31063205 - 31063381
Alignment:
| Q |
59 |
tcatcactcttacaaccatcaatttcattacctatagtctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcat |
158 |
Q |
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| T |
31063205 |
tcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcat |
31063304 |
T |
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| Q |
159 |
taataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattc |
235 |
Q |
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| T |
31063305 |
tgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattc |
31063381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 31057169 - 31057292
Alignment:
| Q |
105 |
tcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatt |
204 |
Q |
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||||||||||||||||||||| || || |||| | | |||| |||||||| | ||||| |||||||||||||||||| ||||||||||||| ||||| |
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| T |
31057169 |
tcttataagtatacctctttgatatgacgagaaacacgcacacattcaaagaactaatagctgccaacatccaataaaagttatccaaacgactcgaatt |
31057268 |
T |
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| Q |
205 |
tatatccttcccaatccaactttt |
228 |
Q |
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| T |
31057269 |
tatatccttcccaatccaactttt |
31057292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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