View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_52 (Length: 283)
Name: NF0718_low_52
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 18551429 - 18551664
Alignment:
| Q |
1 |
cacacccaaggaagattttcttaatgtcatcaaaagccataatagaatctggtaaaggccctaggaaagcataaacagtgttagagatagagtatggaat |
100 |
Q |
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| T |
18551429 |
cacacccaaggaagattttcttaatgttatcaaaagccatagtagaatctggtaaaggccctaggaaagcataaatagtgttagagacagagtatggaat |
18551528 |
T |
|
| Q |
101 |
cagtacttaggatcgccatatttttgcttctttcgattccagctaagggtttggtgcataagcttgattgttcttcgtatgaagagcattcaaattcgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18551529 |
cagtacttaggatcgccatatttttgcttctttcgctttcagctaagggtttggtgcataagcttgattgttcttcgtatgaagggcattcaaattcgca |
18551628 |
T |
|
| Q |
201 |
gcctcaggaatcgaaacattgaggtagatgatgatg |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18551629 |
gcctcaggaatcgaaacattgaggtagatgatgatg |
18551664 |
T |
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