View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_57 (Length: 274)
Name: NF0718_low_57
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_57 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 42 - 274
Target Start/End: Complemental strand, 30666027 - 30665795
Alignment:
| Q |
42 |
gacatcatcaggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaacc |
141 |
Q |
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| T |
30666027 |
gacattatcaggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaacc |
30665928 |
T |
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| Q |
142 |
agatggtgaatgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcat |
241 |
Q |
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| T |
30665927 |
agatggtgaatgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcat |
30665828 |
T |
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| Q |
242 |
tgtcaccggtaatgatttcccaacactttatgc |
274 |
Q |
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| T |
30665827 |
tgtcaccggtaacgatttctcaacactttatgc |
30665795 |
T |
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Back To:
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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 34435376 - 34435172
Alignment:
| Q |
54 |
aagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaatg |
153 |
Q |
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| T |
34435376 |
aagggaaa-atgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaatg |
34435278 |
T |
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| Q |
154 |
ccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccggtaa |
253 |
Q |
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| T |
34435277 |
caacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcacgtgtgcctatcattgttactggtaa |
34435178 |
T |
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| Q |
254 |
tgattt |
259 |
Q |
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|||||| |
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| T |
34435177 |
tgattt |
34435172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 6853760 - 6853582
Alignment:
| Q |
42 |
gacatcatcaggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaacc |
141 |
Q |
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| T |
6853760 |
gacattatcagaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaacc |
6853661 |
T |
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| Q |
142 |
agatggtgaatgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaaga |
220 |
Q |
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| T |
6853660 |
agatggtaaatgcaaccctcatgaacattgctgacaaccctaccaatgttcaacttcccggtatgtacaacaaagaaga |
6853582 |
T |
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