View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_58 (Length: 273)
Name: NF0718_low_58
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 23134899 - 23134642
Alignment:
| Q |
1 |
tagtgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134899 |
tagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt |
23134800 |
T |
|
| Q |
101 |
tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134799 |
tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct |
23134700 |
T |
|
| Q |
201 |
aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23134699 |
aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
23134642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 20282682 - 20282939
Alignment:
| Q |
1 |
tagtgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282682 |
tagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt |
20282781 |
T |
|
| Q |
101 |
tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282782 |
tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct |
20282881 |
T |
|
| Q |
201 |
aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20282882 |
aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
20282939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 11894981 - 11895238
Alignment:
| Q |
1 |
tagtgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11894981 |
tagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt |
11895080 |
T |
|
| Q |
101 |
tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11895081 |
tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgacccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagct |
11895180 |
T |
|
| Q |
201 |
aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11895181 |
aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
11895238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 14655997 - 14655859
Alignment:
| Q |
4 |
tgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttca |
103 |
Q |
| |
|
||||||||||||||| || || |||| |||| || |||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||||| ||| |
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| T |
14655997 |
tgttgtcgcccccactcaaccgcaaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaaataaacaaactaccactaatgaagctca |
14655898 |
T |
|
| Q |
104 |
agaaaatgatcccaccttagtcaataatccaacacctga |
142 |
Q |
| |
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| |||||| ||||| | ||||||||| ||||||||| |
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| T |
14655897 |
aaaaaatgttcccattgttatcaataatcaaacacctga |
14655859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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