View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_61 (Length: 264)
Name: NF0718_low_61
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 3492400 - 3492159
Alignment:
| Q |
21 |
acatcatcacccttacaaggaatcttcctaacagcaatcataaattcactatcactactggaatctgaaatgttcaaattaaaaacaccttgaatcaaaa |
120 |
Q |
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| T |
3492400 |
acatcatcacccttacaaggaatcttcctaacagcaatcataaattcactatcactactggaatctgaaatgttcaaattaaaaacaccttgaatcaaaa |
3492301 |
T |
|
| Q |
121 |
ccaaaccaagctcttctgaattaatacaaacttgaagagcagcacaaagagcaacaccggcagcaacaaaacaatccctagaaaaagcatcagagcccat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492300 |
ccaaaccaagctcttctgaattaatacaaacttgaagagcagcacaaagagcaacaccggcagcaacaaaacaatccctagaaaaagcatcagagcccat |
3492201 |
T |
|
| Q |
221 |
caaattcaaaacaacactcacaacccccttcatctcactcga |
262 |
Q |
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| T |
3492200 |
caaattcaaaacaacactcacaaccccctccatcacactcga |
3492159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 23904257 - 23904351
Alignment:
| Q |
107 |
accttgaatcaaaaccaaaccaagctctt-----ctgaattaatacaaacttgaagagcagcacaaagagcaacaccggcagcaacaaaacaatcc |
197 |
Q |
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||||| ||||||||||||| ||||||| | ||||| ||| ||||||||||| | ||||||||||||||||| | |||||||||||||||||| |
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| T |
23904257 |
accttaaatcaaaaccaaatcaagctcctgtgaactgaactaacacaaacttgaaaa-cagcacaaagagcaacatcagcagcaacaaaacaatcc |
23904351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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