View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_62 (Length: 262)
Name: NF0718_low_62
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 10078775 - 10078531
Alignment:
| Q |
1 |
tcattgaattttgctgtctagcgttcatagagttctggtggagaagtccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttatt |
100 |
Q |
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| T |
10078775 |
tcattgaattttgctgtctagcgttcatagagttctggtggagaagtccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttatt |
10078676 |
T |
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| Q |
101 |
tacacttaccacaccattgttagaagggacttgcatagcagcagcttgcacagagttttgatcaccatttgagttgggggccaccatatgctgctgttgc |
200 |
Q |
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| T |
10078675 |
tacacttaccacaccattgttagaagggacttgcatagcagcagcttgcacagagttttgatcaccatttgagttgggggccaccatatgctgttgttgc |
10078576 |
T |
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| Q |
201 |
tgctgtaattgttcttcagactgttgcgcctgatgatgatgtcca |
245 |
Q |
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| T |
10078575 |
tgctgtaattgatcttcagactgttgcgcctgattatgatgtcca |
10078531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 40776158 - 40776318
Alignment:
| Q |
15 |
tgtctagcgttcatagagttctggtggagaagtccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttatttacacttaccacac |
114 |
Q |
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| T |
40776158 |
tgtctagaattcacagagttttggtggagaagtccaacaatagtgcttgtggttgttgatgcggacgccgagttgacagaactatttacactaaccatac |
40776257 |
T |
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| Q |
115 |
cattgttagaagggacttgcatagcagcagcttgcacagagttttgatcaccatttgagtt |
175 |
Q |
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| T |
40776258 |
cattgctggaagcaatttgcatggaagcagcttgcactgggttttgatcgccatttgagtt |
40776318 |
T |
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