View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0718_low_63 (Length: 262)
Name: NF0718_low_63
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 19394271 - 19394449
Alignment:
| Q |
49 |
ccatacttatttcacttctcttcataagtgcgtagaaatagagtggagacaccaactattttctattttccacatttctccctgggtttgatgatatata |
148 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19394271 |
ccatacttatttcacttctcttcataggtgcgaagaaatagagtggagacaccaactattttctattttccacatttctccttgggtttgatgatatata |
19394370 |
T |
|
| Q |
149 |
ctacta--atatactaccaacnnnnnnnngttatataatctttttctttttaataaagaaaatttagagtgagaggatga |
226 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19394371 |
ctactaatatatacttccaac-tttttttgttatataatctttttctttttaatatagaaaatttagagtgagaggatga |
19394449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 10311199 - 10311076
Alignment:
| Q |
22 |
gagcagagagacaaaatgttgtgggacccatacttatttcacttctcttcataagtgcgtagaaatagagtggagacaccaactattttctattttccac |
121 |
Q |
| |
|
||||||||||||||||||| | |||||||| || |||||||||||||| ||| | |||| |||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10311199 |
gagcagagagacaaaatgtggcgggacccacacctatttcacttctctccatgattgcgaagaaatagagtggagacaccaactttttcctattttccac |
10311100 |
T |
|
| Q |
122 |
atttctccctgggtttgatgatat |
145 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
10311099 |
atttctccctggttttgatgatat |
10311076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 26756974 - 26756851
Alignment:
| Q |
26 |
agagagacaaaatgttgtgggacccatacttatttcacttctcttcataagtgcgtagaaatagagtggagacaccaactattttctattttccacattt |
125 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||||||||| |||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
26756974 |
agagagacaaaatattgtgggacccatgcctatttcacttctctccatatgtgcggagaaatgcagtggagacacgaacttttttctattttccacattt |
26756875 |
T |
|
| Q |
126 |
ctccctgggtttgatgatatatac |
149 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
26756874 |
ctccctggtttcaatgatatatac |
26756851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 42271963 - 42271844
Alignment:
| Q |
30 |
agacaaaatgttgtgggacccatacttatttcacttctcttcataagtgcgtagaaatagagtggagacaccaactattttctattttccacatttctcc |
129 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| | || ||||| |||||| |||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
42271963 |
agacaaaatgttgtgggacccatgcctatttcacttctctccttatgtgcggagaaatgcagtggagacataaacttttttcttttttccacatttctcc |
42271864 |
T |
|
| Q |
130 |
ctgggtttgatgatatatac |
149 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
42271863 |
ctggtttcaatgatatatac |
42271844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 30672697 - 30672599
Alignment:
| Q |
26 |
agagagacaaaatgttgtgggacccatacttatttcacttctcttcataagtgcgtagaaatagagtggagacaccaactattttctattttccacattt |
125 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||||||||| |||| ||||| |||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
30672697 |
agagagacaaaatattgtgggacccatgcctatttcacttctctccatatgtgcggagaaat-------ggacacaaacttttttctattttccacattt |
30672605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 52907680 - 52907606
Alignment:
| Q |
24 |
gcagagagacaaaatgttgtgggacccatacttatttcacttctcttcataagtgcgtagaaatagagtggagac |
98 |
Q |
| |
|
||||||||| |||||| ||||||||||| || | |||||||||| |||||||| | |||||||||| |||||| |
|
|
| T |
52907680 |
gcagagagataaaatgatgtgggacccacaccttcatcacttctctccataagtgtgaagaaatagagcggagac |
52907606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 242 times since January 2019
Visitors: 4374