View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_65 (Length: 258)
Name: NF0718_low_65
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 79 - 245
Target Start/End: Complemental strand, 48856259 - 48856093
Alignment:
| Q |
79 |
aaaacctaaactcgccatatttgcaaggatcaaagatatattttagcatagttttaaattatcaatattcgatctgcggtcaatggccaggaatcataaa |
178 |
Q |
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||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
48856259 |
aaaacctaaactcaccatatttgcaaggattaaaaacatattttagcatagttttaaattatcaatattcgatctgcagacaatggccaggaatcataaa |
48856160 |
T |
|
| Q |
179 |
tataaatatcagactgagacgtgcttattcaaaaatagaaaatatcagacgtgccaatttccatgtg |
245 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48856159 |
tatcaatatcagactgagacgtgcttattcaaaaatagaaaatatcagacgtgccaatttccatgtg |
48856093 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 6894022 - 6894068
Alignment:
| Q |
79 |
aaaacctaaactcgccatatttgcaaggatcaaagatatattttagc |
125 |
Q |
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|||||||||||||| |||||||||||||| |||| | |||||||||| |
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| T |
6894022 |
aaaacctaaactcgtcatatttgcaaggaccaaaaacatattttagc |
6894068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 4705728 - 4705682
Alignment:
| Q |
79 |
aaaacctaaactcgccatatttgcaaggatcaaagatatattttagc |
125 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
4705728 |
aaaacctaaactcgccatatttgcagggatcaaaagcatattttagc |
4705682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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