View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_69 (Length: 253)
Name: NF0718_low_69
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_69 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 28741836 - 28741604
Alignment:
| Q |
21 |
acatcatcatgttaggtgaaactagaatctctgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgc |
120 |
Q |
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| T |
28741836 |
acatcatcatgttaggttaaactagaatctttgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgc |
28741737 |
T |
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| Q |
121 |
atttctagataaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaa |
220 |
Q |
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| T |
28741736 |
atttctagttaaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcacaattgacacataattgtggagaatctaatatcaa |
28741637 |
T |
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| Q |
221 |
cgatgtttcattcaatgaatgaaattcaaagat |
253 |
Q |
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| T |
28741636 |
cgatgtttcattcaatgaatgaaattcaaagat |
28741604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 28733644 - 28733412
Alignment:
| Q |
21 |
acatcatcatgttaggtgaaactagaatctctgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgc |
120 |
Q |
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| T |
28733644 |
acatcatcatgttaggtgaaactagaatatttgtcatgtgaaggtacacaaggtagatgtatgctttactacaaatattttttgtctaaattatcagtgc |
28733545 |
T |
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| Q |
121 |
atttctagataaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaa |
220 |
Q |
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| T |
28733544 |
atttctagataaataacttgacagggatatcttccaagatttgtatatcaatcatggatgaatcccaattgacacgtaattgtggataatctaatatcaa |
28733445 |
T |
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| Q |
221 |
cgatgtttcattcaatgaatgaaattcaaagat |
253 |
Q |
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| T |
28733444 |
cgatgtttcagtcaatgaataaaattcaaagat |
28733412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 28717970 - 28717744
Alignment:
| Q |
25 |
catcatgttaggtgaaactagaatctctgtcatgtgaagatacacaaggtagatgtttgatttactacaaatattttctgtctaaattaccagtgcattt |
124 |
Q |
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| T |
28717970 |
catcatgtttagtgaaactagaatatttttcatgtgaaggtacacaaggtagatgtatgctttactacaaagaatttccctctaaattatcggtgcattt |
28717871 |
T |
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| Q |
125 |
-ctagataaaaaacttgacagggatatcttccaagatttggatatcaatcatggatgaatcccaattgacacataattgtggagaatctaatatcaacga |
223 |
Q |
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| T |
28717870 |
tctagatgaaattcttgacagggatatcttccaagatatgtatattaatcatggatgaatctcaattaacgcataattgtggagaatctaataccaatga |
28717771 |
T |
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| Q |
224 |
tgtttcattcaatgaatgaaattcaaa |
250 |
Q |
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| T |
28717770 |
tgtttcagtcagtgaatcaaattcaaa |
28717744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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