View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_7 (Length: 497)
Name: NF0718_low_7
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 5 - 484
Target Start/End: Complemental strand, 15780820 - 15780339
Alignment:
| Q |
5 |
ttaccaactgatcagtcaactccattgacggacaatacacatattgaaatatagtgggatggttttaaagtattttttatattgtaactatatggctatt |
104 |
Q |
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| T |
15780820 |
ttaccaactgatcagtcaactccattgacggacaatacacatgttgaaatatagtgggatggttttaaagtattttttatattgtaactatatggttatt |
15780721 |
T |
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| Q |
105 |
aaatttttaaaataaatacatccctttgaatttgtcccnnnnnnnagtnnnnnnnnn--gctttgaaacttctaataatttcctagagcctttgactaag |
202 |
Q |
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| T |
15780720 |
aaatttttaaaataaatacatccctttgaatttgtccctttttttagtaaaaaaaaaaagctttgaaacttctaataatttcctagagcctttgactaag |
15780621 |
T |
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| Q |
203 |
caaaaacgcgttttagtttggctatagaattgatggacttgatttggtcaaagacactattttcttatttcacactaacaagcaaggttactacatatct |
302 |
Q |
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| T |
15780620 |
caaaaacgcgttttagtttggctatagaattgatggacttgatttggtcaaagacactattttcttatttcacactaacaagcaaggttactacatatct |
15780521 |
T |
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| Q |
303 |
tgatataccacttgcatgccatttgaatcatttctcaatccaaattccaaccataaactacaaacatgagtaattttcactatcagtttcctgattctcc |
402 |
Q |
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| T |
15780520 |
tgatataccacttgcatgccatttgaatcatttctcaatccaaattccaaccataaactacaaacatgagtaattttcactatcagtttcctgattctcc |
15780421 |
T |
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| Q |
403 |
tccttccttttacacttcatcatcagacaattttgatacacaggctcagagaacttttgacagatttggtgacactgttgat |
484 |
Q |
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| T |
15780420 |
tccttccttttacacttcatcatcagacaattttgatacacaggctcagagaacttttgacagatttggtgacactgttgat |
15780339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 424
Target Start/End: Original strand, 15791718 - 15791780
Alignment:
| Q |
362 |
acaaacatgagtaattttcactatcagtttcctgattctcctccttccttttacacttcatca |
424 |
Q |
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| T |
15791718 |
acaaacatgactgattttcactatcagtttcctgattctcctccttcctcttacacttcatca |
15791780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 15785442 - 15785401
Alignment:
| Q |
18 |
agtcaactccattgacggacaatacacatattgaaatatagt |
59 |
Q |
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| T |
15785442 |
agtcaacttcattgacagacactacacatattgaaatatagt |
15785401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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