View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_70 (Length: 253)

Name: NF0718_low_70
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_70
NF0718_low_70
[»] chr8 (13 HSPs)
chr8 (21-246)||(6310267-6310492)
chr8 (21-246)||(32633346-32633571)
chr8 (21-236)||(5549878-5550093)
chr8 (21-236)||(5607836-5608051)
chr8 (21-236)||(5627319-5627534)
chr8 (21-231)||(14404811-14405021)
chr8 (21-241)||(5571456-5571676)
chr8 (24-246)||(13164960-13165182)
chr8 (21-209)||(12188420-12188608)
chr8 (21-209)||(12432848-12433036)
chr8 (21-208)||(12177099-12177286)
chr8 (21-208)||(12421527-12421714)
chr8 (27-113)||(9394271-9394357)
[»] scaffold0363 (1 HSPs)
scaffold0363 (21-231)||(13832-14042)
[»] chr2 (1 HSPs)
chr2 (21-236)||(19492820-19493035)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 6310267 - 6310492
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6310267 acatcatctattacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 6310366  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6310367 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgttaccttttctaagaagcaactgccttcatatttaaaagagac 6310466  T
Q  221 cctttgaaacatagcaacagctaggg 246  Q
    |||||||||||||||| |||| ||||    
T  6310467 cctttgaaacatagcagcagcaaggg 6310492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 32633571 - 32633346
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||||| ||||    
T  32633571 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcatggatggtattactttggcagattcaatatcaagatcttcccttagta 32633472  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |||| |||||||||||||||||| || ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||    
T  32633471 acttagaaagaagtttgttgcatatgaaattgattccatgcctttttgatacttctgtcacattttctaagaagcaactgccttcatacttgaaagagac 32633372  T
Q  221 cctttgaaacatagcaacagctaggg 246  Q
    ||||||||||| |||| |||| ||||    
T  32633371 cctttgaaacaaagcagcagcaaggg 32633346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 5550093 - 5549878
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||| ||||| ||||| ||| |||||||||||||||||  | ||||    
T  5550093 acatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagta 5549994  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |||| ||||||||||||||||||||||||||||| ||| | || |||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||    
T  5549993 acttagaaagaagtttgttgcatgtgtaattgattccacgactttttgatacttctgtaaccttttcaaagaagcaactgccatcatatttgaaagagac 5549894  T
Q  221 cctttgaaacatagca 236  Q
    ||||||||||||||||    
T  5549893 cctttgaaacatagca 5549878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 5607836 - 5608051
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||| ||||| ||||| ||| |||||||||||||||||  | ||||    
T  5607836 acatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagta 5607935  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    ||||  |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||    
T  5607936 acttacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgccatcatatttgaaagagac 5608035  T
Q  221 cctttgaaacatagca 236  Q
    ||||||||||||||||    
T  5608036 cctttgaaacatagca 5608051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 5627534 - 5627319
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||| ||||| ||||| ||| |||||||||||||||||  | ||||    
T  5627534 acatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagta 5627435  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    ||||  |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||    
T  5627434 acttacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgccatcatatttgaaagagac 5627335  T
Q  221 cctttgaaacatagca 236  Q
    ||||||||||||||||    
T  5627334 cctttgaaacatagca 5627319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 14405021 - 14404811
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||| ||||| | | |||||||||||||||||||| ||||    
T  14405021 acatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatagatggtattagtttgggactgtcaatatcaagatcttcccttagta 14404922  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |||||||||||||||||||||| | ||||||||| ||||| || || |||||||||||||||||||| || ||||| |||||||||||||| |||||||     
T  14404921 acttggaaagaagtttgttgcacgcgtaattgattccatgccttttcgatacttctgtcaccttttcaaacaagcagctgccttcatatttgaaagagaa 14404822  T
Q  221 cctttgaaaca 231  Q
    |||||||||||    
T  14404821 cctttgaaaca 14404811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 5571676 - 5571456
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||| ||||||||||||||||||  || ||||||||||| ||||||| | ||| |||| ||||| ||| ||||||  |||||||||||  ||||    
T  5571676 acatcatctaatacaatgaaagatttcatatgtctgagtcttctcttgatcatggctgggattactttgggagtgtcaatacgaagatcttcccctagta 5571577  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |||||||||||||||||||||| ||||||||||| |||||  | ||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||     
T  5571576 acttggaaagaagtttgttgcacgtgtaattgattccatgcttttttgaaacttctgtcaccctttctaagaagcaattgccttcatatttgaaagagaa 5571477  T
Q  221 cctttgaaacatagcaacagc 241  Q
    |||||||||||||||| ||||    
T  5571476 cctttgaaacatagcagcagc 5571456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 13165182 - 13164960
Alignment:
Q  24 tcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaact 123  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||  |||   ||||||||| |||||||  |||||||    
T  13165182 tcatctagtacaatgaaagatttcatgcgtttgagtcttctcctgatcatggatggtattactttgagagtggtaatatcaaggtcttcccctagtaact 13165083  T
Q  124 tggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagaccct 223  Q
    |||||||||||||||||||||||| |||||| |||||  | | ||||  ||||||||| |||||||||||||||  ||||||||| | | ||||||| ||    
T  13165082 tggaaagaagtttgttgcatgtgtcattgattccatgcttttctgattgttctgtcacattttctaagaagcaatggccttcatagtgagaagagactct 13164983  T
Q  224 ttgaaacatagcaacagctaggg 246  Q
    ||||||||| ||| |||| ||||    
T  13164982 ttgaaacatggcagcagcaaggg 13164960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 12188420 - 12188608
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| | ||| |||| ||||| ||| | ||| ||||||| |||||||||||  ||||    
T  12188420 acatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagta 12188519  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatat 209  Q
     ||| ||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  12188520 gcttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactaccttcatat 12188608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 12432848 - 12433036
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| | ||| |||| ||||| ||| | ||| ||||||| |||||||||||  ||||    
T  12432848 acatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagta 12432947  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatat 209  Q
     ||| ||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  12432948 gcttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactaccttcatat 12433036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 12177099 - 12177286
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| | ||| |||| ||||| ||| | ||| ||||||| |||||||||||  ||||    
T  12177099 acatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagta 12177198  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcata 208  Q
    |||| ||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  12177199 acttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcata 12177286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 12421527 - 12421714
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| | ||| |||| ||||| ||| | ||| ||||||| |||||||||||  ||||    
T  12421527 acatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagta 12421626  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcata 208  Q
    |||| ||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  12421627 acttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcata 12421714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 9394271 - 9394357
Alignment:
Q  27 tctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttcc 113  Q
    |||||||||||||||| ||||||| |||||||||||  ||| | ||| |||| ||||| ||||| ||| |||||| |||||||||||    
T  9394271 tctagtacaatgaaagctttcatgtgtttgagtctttacataaccatagatgatattactttgggagtgtcaataccaagatcttcc 9394357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 13832 - 14042
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||| ||||| | | |||||||||||||||||||| ||||    
T  13832 acatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatagatggtattagtttgggactgtcaatatcaagatcttcccttagta 13931  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |||||||||||||||||||||| | ||||||||| ||||| || || |||||||||||||||||||| || ||||| |||||||||||||| |||||||     
T  13932 acttggaaagaagtttgttgcacgcgtaattgattccatgccttttcgatacttctgtcaccttttcaaacaagcagctgccttcatatttgaaagagaa 14031  T
Q  221 cctttgaaaca 231  Q
    |||||||||||    
T  14032 cctttgaaaca 14042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 19492820 - 19493035
Alignment:
Q  21 acatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagta 120  Q
    |||||||||||||||||||||| |||||| | |||||||||||| |||| ||| ||||  |||| | | |  || || |||| || |||||||| |||||    
T  19492820 acatcatctagtacaatgaaagctttcattcctttgagtcttctaatgaccatggatgacattactataggcgtgtcgatattaacatcttccccgagta 19492919  T
Q  121 acttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgtcaccttttctaagaagcaactgccttcatatttaaaagagac 220  Q
    |  |||||| |||||| ||  | ||| ||||||| ||||  || |||||| |||||| ||||||||||||||||||  | |||| ||||||  ||||||     
T  19492920 atgtggaaacaagttttttataagtgaaattgattccattcctttttgattcttctgccaccttttctaagaagcaggtaccttgatatttgcaagagaa 19493019  T
Q  221 cctttgaaacatagca 236  Q
      ||||||||||||||    
T  19493020 attttgaaacatagca 19493035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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