View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_72 (Length: 251)
Name: NF0718_low_72
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6272773 - 6273001
Alignment:
| Q |
1 |
cattgctatcacttccttgaccttcttggcagaatccaattccaccaatgcacattgtggcatgctgcttggtcctaggtagttcgggataaacttgaca |
100 |
Q |
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| T |
6272773 |
cattgctatcacttccttgaccttcttggcagaatccaattccaccaatgcacattgtggcatgctgcttggtcctaggtagttggggataaacttgaca |
6272872 |
T |
|
| Q |
101 |
cttttcacagatgcaaactggtcaagcgcagttctaatcacggattccgtaacttgtggagacatgttgtcaatgtacactgtcctttgaactttctctt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6272873 |
cttttgacagatgcaaactggtcaagcgcagttctaatcacggattccgtaacttgcggagacatgttgtcaatgtacactgtcctttgaactttctctt |
6272972 |
T |
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| Q |
201 |
caaatgcagcataatcttcagctgatgat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6272973 |
caaatgcagcataatcttcagctgatgat |
6273001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9824073 - 9823845
Alignment:
| Q |
1 |
cattgctatcacttccttgaccttcttggcagaatccaattccaccaatgcacattgtggcatgctgcttggtcctaggtagttcgggataaacttgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
9824073 |
cattgctatcacttccttgaccttcttggcagaatccaattccaccaatgcacattgtggcatgctgcttggtcctagagagttggggataaacttgaca |
9823974 |
T |
|
| Q |
101 |
cttttcacagatgcaaactggtcaagcgcagttctaatcacggattccgtaacttgtggagacatgttgtcaatgtacactgtcctttgaactttctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9823973 |
cttttcacagatgcaaactggtcaagcgcagttctaatcacggattccgtgacttgtggagacatgttgtcaatgtacactgtcctttgaactttctctt |
9823874 |
T |
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| Q |
201 |
caaatgcagcataatcttcagctgatgat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9823873 |
caaatgcagcataatcttcagctgatgat |
9823845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35680465 - 35680241
Alignment:
| Q |
1 |
cattgctatcacttccttgaccttcttggcagaatccaattccaccaatgcacattgtggcatgctgcttggtcctaggtagttcgggataaacttgaca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35680465 |
cattgctatcacttccttgaccttcttggcagaatccaattccaccaatgcacattgtggcatgctgcttggtcctaggtagttggggataaacttgaca |
35680366 |
T |
|
| Q |
101 |
cttttcacagatgcaaactggtcaagcgcagttctaatcacggattccgtaacttgtggagacatgttgtcaatgtacactgtcctttgaactttctctt |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35680365 |
cttttcacagatgcaaactggtcgagcgcagttctaatcacagattccgtaacttgtggagacatgttgtcaaagtacactgtcctttgaactttctctt |
35680266 |
T |
|
| Q |
201 |
caaatgcagcataatcttcagctga |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
35680265 |
caaatgcagcataatcttcagctga |
35680241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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