View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_78 (Length: 249)

Name: NF0718_low_78
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_78
NF0718_low_78
[»] chr4 (2 HSPs)
chr4 (124-249)||(51808109-51808231)
chr4 (30-79)||(51808015-51808064)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 51808109 - 51808231
Alignment:
Q  124 aataacaagtcacaatccagattgataataataatagagaaagnnnnnnnnnttacccagtccaacttctttcaaaaacattgactataattttgnnnnn 223  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||         
T  51808109 aataacaagtcacaatccagattgataataataatagagaaa--aaaaaaaattacccagtccaacttctttcaaaaacattgactataattttg-tttt 51808205  T
Q  224 nnnataaaagtcaacaaacacaccaa 249  Q
       |||||||||||||||||||||||    
T  51808206 tttataaaagtcaacaaacacaccaa 51808231  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 51808015 - 51808064
Alignment:
Q  30 gatgccttcttagatctatatttcgaaggaaagccatgtttggaaaaatc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51808015 gatgccttcttagatctatatttcgaaggaaagccatgtttggaaaaatc 51808064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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