View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_81 (Length: 242)
Name: NF0718_low_81
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6272503 - 6272272
Alignment:
| Q |
1 |
cttattcgatctgcagagtaagcctctagaagtagatgttgaacatatgaatgtccaactacannnnnnnctaacggaatagtagttagtagtaaccttt |
100 |
Q |
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| T |
6272503 |
cttattcgatctgcagagtaagcctctggaagtagatgttgaacatatgaatgtccaactacatttttttctaacggaatagtagttagtagtaacctta |
6272404 |
T |
|
| Q |
101 |
aa---gtttattgcaagtatgaaacttactagtaagtttgtgggagcagccggtggaaatggtgatgtacctagtgatgctggatttcttttagaccatt |
197 |
Q |
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| T |
6272403 |
agcatgtttattgcaagtatgaaacttactagtaagtttgtgggagcagccggtggaaatggtgatgtacgtagtgatgctggatttcttttagaccatt |
6272304 |
T |
|
| Q |
198 |
agcacatagtctttatcacttatactgatgat |
229 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6272303 |
agcacatagtctttatcacttatactgatgat |
6272272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9824344 - 9824575
Alignment:
| Q |
1 |
cttattcgatctgcagagtaagcctctagaagtagatgttgaacatatgaatgtccaactacannnnnnnctaacggaatagtagttagtagtaaccttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
9824344 |
cttattcgatctgcagagtaagcctctagaagtagatgttgaacatatgaatgtccaactacatttttttctaacggaatagcagttagtagtaacctta |
9824443 |
T |
|
| Q |
101 |
aa---gtttattgcaagtatgaaacttactagtaagtttgtgggagcagccggtggaaatggtgatgtacctagtgatgctggatttcttttagaccatt |
197 |
Q |
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| T |
9824444 |
agcatgtttattgcaagtataaaacttactagtaagtttgagggagcagccggtggaaatggtgatgtacctagtgatgctggatttcttttagaccatt |
9824543 |
T |
|
| Q |
198 |
agcacatagtctttatcacttatactgatgat |
229 |
Q |
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| T |
9824544 |
agcacatagtctttatcacttatactgatgat |
9824575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 35680741 - 35680941
Alignment:
| Q |
5 |
ttcgatctgcagagtaagcctctagaagtagatgttgaacatatgaatgtccaactacannnnnnnct--aacggaatagtagttagtagtaacctt--- |
99 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||| ||||||||||||| || |
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| T |
35680741 |
ttcgatttgcagagtaagcctctagaagtagatgttgaacatatgaatttccaaccacatttttatttttaacggaatagcagttagtagtaactttaag |
35680840 |
T |
|
| Q |
100 |
taagtttatt-gcaagtatgaaacttactagtaagtttgtgggagcagccggtggaaatggtgatgtacctagtgatgctggatttcttttagaccatta |
198 |
Q |
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|| ||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||||||||| | |||||| |
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| T |
35680841 |
tatgtttatttgtaagtatgaaacttactagtaagtttgtgggagaagccagtggaaatgctgatgtaccaagtgatggtggatttcttttgggccatta |
35680940 |
T |
|
| Q |
199 |
g |
199 |
Q |
| |
|
| |
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|
| T |
35680941 |
g |
35680941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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