View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_82 (Length: 239)
Name: NF0718_low_82
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_82 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 49732550 - 49732779
Alignment:
| Q |
10 |
catcatcaccaagcacaatgccaacaagaaacacaaaaacccatgaaaaacgaggttcgaaaatgagtcctattgttttagtagcaattatagtaggtga |
109 |
Q |
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| T |
49732550 |
catcatcaccaagcacaatgccaacaagaaacacaaaaacccatgaaaaacgaggttcgaaaatgagtcctattgttttagtagcaattatagtaggtga |
49732649 |
T |
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| Q |
110 |
tgttcttgttcttggaatagtgtgtttacttctatattgctatttttggaaaaactattgttcaaaatcaaaggagaaaaaaggtttgaagctatttgag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49732650 |
tgttcttgttcttggaatagtgtgtttacttctatattgctatttttggaaaaactattgttcaaaatcaaaggagaaaaaaggtttgaagctatttgag |
49732749 |
T |
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| Q |
210 |
agtgaaaagatagtgtattcatcaagtcca |
239 |
Q |
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| T |
49732750 |
agtgaaaagatagtgtattcatcaagtcca |
49732779 |
T |
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