View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_86 (Length: 228)

Name: NF0718_low_86
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_86
NF0718_low_86
[»] chr2 (15 HSPs)
chr2 (1-76)||(28741302-28741377)
chr2 (1-122)||(19616340-19616461)
chr2 (172-228)||(28741543-28741599)
chr2 (185-228)||(28733364-28733407)
chr2 (1-118)||(15342279-15342397)
chr2 (178-227)||(28670874-28670923)
chr2 (38-121)||(21626586-21626670)
chr2 (1-68)||(28719057-28719124)
chr2 (138-173)||(28741387-28741422)
chr2 (178-228)||(28642291-28642341)
chr2 (178-228)||(28651152-28651202)
chr2 (178-228)||(28675018-28675068)
chr2 (178-228)||(28691494-28691544)
chr2 (179-217)||(28717704-28717742)
chr2 (1-75)||(29800419-29800493)
[»] chr4 (4 HSPs)
chr4 (1-122)||(30040750-30040872)
chr4 (1-118)||(11420924-11421042)
chr4 (38-122)||(19365423-19365508)
chr4 (15-106)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (38-104)||(23846700-23846767)
chr6 (1-122)||(20736604-20736726)
chr6 (1-122)||(21994492-21994614)
chr6 (8-122)||(4073480-4073595)
chr6 (1-122)||(8612820-8612941)
chr6 (1-74)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-118)||(13225-13343)
[»] chr7 (11 HSPs)
chr7 (1-122)||(3587813-3587935)
chr7 (3-121)||(15170307-15170428)
chr7 (1-122)||(19393700-19393822)
chr7 (1-122)||(28130465-28130587)
chr7 (38-122)||(18259437-18259522)
chr7 (1-122)||(47167135-47167257)
chr7 (38-122)||(2935935-2936020)
chr7 (33-109)||(19388469-19388546)
chr7 (38-106)||(31190756-31190825)
chr7 (1-122)||(15999886-16000008)
chr7 (1-122)||(24443603-24443724)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-121)||(8636-8757)
[»] chr3 (4 HSPs)
chr3 (3-122)||(15526658-15526777)
chr3 (3-122)||(11787491-11787611)
chr3 (3-122)||(25979006-25979126)
chr3 (52-122)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (1-122)||(7865710-7865831)
chr5 (1-122)||(12765270-12765391)
chr5 (1-122)||(20100519-20100641)
chr5 (1-122)||(5097555-5097677)
chr5 (1-122)||(12704154-12704275)
chr5 (1-122)||(39535368-39535490)
chr5 (1-122)||(9812013-9812134)
chr5 (1-121)||(31652060-31652181)
chr5 (1-122)||(26245006-26245128)
chr5 (38-122)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-121)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (2-122)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (1-122)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (3-122)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (1-109)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (38-122)||(8727568-8727653)
chr1 (1-120)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (3-122)||(18835254-18835374)
chr8 (1-122)||(22659770-22659894)
chr8 (1-122)||(20539673-20539798)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28741302 - 28741377
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatt 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741302 tcatcagtctacatacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatt 28741377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19616461 - 19616340
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| || | ||||||||||||| ||||||||| ||||||| | |||  ||||||||||||||| ||||||||    
T  19616461 tcatcagtctacatacataatagtctcgacgcttat-tattatcccaattcatattaaagcttgactacaaatacatttaagaatagtgttctttatgtt 19616363  T
Q  100 aatgtaatcttataattaagtca 122  Q
    ||||||||||||| |||||||||    
T  19616362 aatgtaatcttatgattaagtca 19616340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 28741543 - 28741599
Alignment:
Q  172 aactgtatctctcaaaacaggatcatcatggattcctggtaaatcaattctagggat 228  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28741543 aactgtatctctcaaaacaagatcatcatggattcctggtaaatcaattctacggat 28741599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 28733364 - 28733407
Alignment:
Q  185 aaaacaggatcatcatggattcctggtaaatcaattctagggat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28733364 aaaacaggatcatcatggattcctggtaaatcaattctagggat 28733407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15342279 - 15342397
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    |||||| |||||| |||||||||||   ||| |||  ||||||||||||||||||||||  ||||||| | |||  || |||||||||||| |||||| |    
T  15342279 tcatcaatctacatacataatagtctccacgctttattattatcccaatttatattaaatcttgactacatatacattaaagaatagtgttctttatggt 15342378  T
Q  100 aatgtaatcttataattaa 118  Q
    |||||||||| || |||||    
T  15342379 aatgtaatctcatgattaa 15342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 28670874 - 28670923
Alignment:
Q  178 atctctcaaaacaggatcatcatggattcctggtaaatcaattctaggga 227  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  28670874 atctctcaaaacaggatcatcatggattcctgttaagtcaattgtaggga 28670923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 21626670 - 21626586
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtc 121  Q
    |||||||||| ||||||||||| |||||||   |||| ||||||||||| |||| |||||||||||||||| | || ||||||||    
T  21626670 tattatcccattttatattaaaatttgacttcggatacttttaagaatattgttctttatgttaatgtaatgtcatgattaagtc 21626586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28719057 - 28719124
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgacta 68  Q
    ||||||||||||| |||||||||||  ||||||||  ||||||| ||||||||| ||||  |||||||    
T  28719057 tcatcagtctacatacataatagtctctacgttttattattatctcaatttatactaaaacttgacta 28719124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 28741387 - 28741422
Alignment:
Q  138 actatctctttattaatcttacaacaagcataataa 173  Q
    |||||||||||||||||||||||||||| |||||||    
T  28741387 actatctctttattaatcttacaacaagtataataa 28741422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 28642291 - 28642341
Alignment:
Q  178 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggat 228  Q
    |||||||||| ||||||||||||||||||||  ||| |||||| |||||||    
T  28642291 atctctcaaagcaggatcatcatggattccttttaagtcaattgtagggat 28642341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 28651152 - 28651202
Alignment:
Q  178 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggat 228  Q
    |||||||||| ||||||||||||||||||||  ||| |||||| |||||||    
T  28651152 atctctcaaagcaggatcatcatggattccttttaagtcaattgtagggat 28651202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 28675018 - 28675068
Alignment:
Q  178 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggat 228  Q
    ||||||||||| ||||||||| |||||||||| ||| |||||| |||||||    
T  28675018 atctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggat 28675068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 28691494 - 28691544
Alignment:
Q  178 atctctcaaaacaggatcatcatggattcctggtaaatcaattctagggat 228  Q
    ||||||||||||| |||||||||||||||||| ||  |||||| |||||||    
T  28691494 atctctcaaaacaagatcatcatggattcctgttaggtcaattgtagggat 28691544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 28717704 - 28717742
Alignment:
Q  179 tctctcaaaacaggatcatcatggattcctggtaaatca 217  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  28717704 tctctcaaaacaggaccatcatggattcctagtaaatca 28717742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29800493 - 29800419
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatat 75  Q
    ||||||||||||| |||||||||||  | || |||  |||||||||||||| |||||||| |||| |||| ||||    
T  29800493 tcatcagtctacatacataatagtctttccgctttattattatcccaatttgtattaaagcttgaatatatatat 29800419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30040750 - 30040872
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||| | |||||||||||   | | |||  ||||||||||||| ||||||| | |||||||||||||  ||||||||||||||| ||||||||    
T  30040750 tcatcagtctatatacataatagtctcgatgctttattattatcccaattcatattaacgcttgactatagatacatttaagaatagtgttctttatgtt 30040849  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  30040850 aatgtaatctcatgattaagtca 30040872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11421042 - 11420924
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   | | |||  |||||||| |||| |||||||||||||||||  ||||  ||||||||||| ||| ||||||||    
T  11421042 tcatcagtctacatacataatagtctcgaagctttattattatcctaattcatattaaagtttgactacggatacatttaagaatagcgttctttatgtt 11420943  T
Q  100 aatgtaatcttataattaa 118  Q
    |||||||||| || |||||    
T  11420942 aatgtaatctaatgattaa 11420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 19365508 - 19365423
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 122  Q
    ||||| ||||||||||||||||| |||||||  ||||  ||||||||||| ||| |||| ||||||||||||| || |||||||||    
T  19365508 tattaccccaatttatattaaagcttgactacggatacatttaagaatagcgttctttacgttaatgtaatctcatgattaagtca 19365423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 9537973 - 9537881
Alignment:
Q  15 acataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 106  Q
    ||||||||||| || ||||||  | ||||||||| ||||||||||  ||||||| | |||  ||||||||||| ||| |||||||||||||||    
T  9537973 acataatagtctatgcgttttattgttatcccaaattatattaaatattgactacatatacatttaagaatagcgttctttatgttaatgtaa 9537881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 23846700 - 23846767
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgt 104  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||    
T  23846700 tattatcccaatttatattaaagtttgactacagatacttttaagaatagtgttctttatgtaaatgt 23846767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20736604 - 20736726
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||||| ||  |||||||| ||||||| |||||  |||||||||| |||| ||||||||    
T  20736604 tcatcagtctacatacataatagtctcgacgctttattattatcccagttcttattaaagcttgactacagatacatttaagaataatgttctttatgtt 20736703  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  20736704 aatgtaatctcatgattaagtca 20736726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21994614 - 21994492
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| | |||||||||  | || |||  |||||| |||||||||||||||| | |||||| ||||  ||||||||||||||| ||||| ||    
T  21994614 tcatcagtctacatatataatagtctttgcgctttattattattccaatttatattaaagctcgactatggatacatttaagaatagtgttctttatatt 21994515  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  21994514 aatgtaatctcatgattaagtca 21994492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 4073595 - 4073480
Alignment:
Q  8 tctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 106  Q
    |||||| |||||||||||  ||||||||  ||||||||  |||||||||||||||||||||  |||| ||||||||||| |||| |||   |||||||||    
T  4073595 tctacaaacataatagtctctacgttttattattatcctgatttatattaaagtttgactacggatacttttaagaataatgttctttccattaatgtaa 4073496  T
Q  107 tcttataattaagtca 122  Q
    ||| || |||||||||    
T  4073495 tctcatgattaagtca 4073480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 8612941 - 8612820
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  8612941 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 8612843  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  8612842 aatgtaatctcatgattaagtca 8612820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22560460 - 22560533
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagata 74  Q
    ||||| |||||||  ||||||||||  | || |||  ||||||||||||||||||||||| |||||||| ||||    
T  22560460 tcatcggtctacatgcataatagtctctgcgctttattattatcccaatttatattaaagcttgactatggata 22560533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13225 - 13343
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 99  Q
    ||||| ||||||| |||||||||||   ||| |||  ||||||||||||| ||||||||| |||||||| ||||  |||||||||| || ||||||||||    
T  13225 tcatcggtctacatacataatagtctcgacgctttattattatcccaattaatattaaagcttgactatggatacatttaagaatactgttttttatgtt 13324  T
Q  100 aatgtaatcttataattaa 118  Q
    |||||||||| || |||||    
T  13325 aatgtaatctcatgattaa 13343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3587935 - 3587813
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 99  Q
    ||||| ||||| | |||||||||||  |||| |||  ||||||||||||||||||||||| ||||||||||||   ||||||||||  | ||||||||||    
T  3587935 tcatcggtctatatacataatagtctctacgctttattattatcccaatttatattaaagcttgactatagattcatttaagaataacgttttttatgtt 3587836  T
Q  100 aatgtaatcttataattaagtca 122  Q
    || ||||||| || |||||||||    
T  3587835 aaagtaatctcatgattaagtca 3587813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 15170307 - 15170428
Alignment:
Q  3 atcagtctacacacataatagtcaatacgtttttatattatcccaatt--tatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 99  Q
    ||||||||||| | |||||||||  |||| |||  |||||||||||||  |||||||||| ||||||| | |||| ||||||||||  | ||||||||||    
T  15170307 atcagtctacatatataatagtctctacgctttattattatcccaatttatatattaaagcttgactacaaatatatttaagaataacgttttttatgtt 15170406  T
Q  100 aatgtaatcttataattaagtc 121  Q
    |||||||||| || ||||||||    
T  15170407 aatgtaatctcatgattaagtc 15170428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19393700 - 19393822
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    |||| |||||||| |||||||||||   ||| |||   |||||||||| | ||||||||| ||||||| |||||  |||||||||||  || ||||||||    
T  19393700 tcattagtctacatacataatagtctcgacgctttataattatcccaactcatattaaagcttgactacagatacatttaagaatagcattctttatgtt 19393799  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  19393800 aatgtaatctcatgattaagtca 19393822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28130587 - 28130465
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtg-tttttatgtt 99  Q
    |||||||||||||  ||||||||||   ||| |||  ||||||||  ||| ||||||||| ||||||| |||||  ||||||||||| | |||||||| |    
T  28130587 tcatcagtctacatgcataatagtctcgacgctttattattatccttattcatattaaagcttgactacagatacatttaagaatagcgttttttatgat 28130488  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  28130487 aatgtaatctcatgattaagtca 28130465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 18259437 - 18259522
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 122  Q
    |||||||| |||| ||||||||| |||||||| ||||  |||||||||| |||| |||||| ||||||||||| || |||||||||    
T  18259437 tattatcctaattcatattaaagcttgactatggatacatttaagaataatgttctttatgataatgtaatctcatgattaagtca 18259522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 47167135 - 47167257
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| ||||||| | |||  ||||||||||  ||| |||||| |    
T  47167135 tcatcagtctacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacaaatacatttaagaataacgttctttatgat 47167234  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || || ||||||    
T  47167235 aatgtaatctcatgataaagtca 47167257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 2936020 - 2935935
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 122  Q
    ||||||| ||||| ||||||||| |||||||  ||||  ||||||||||  ||| |||||||||||||||||| || |||||||||    
T  2936020 tattatcgcaattcatattaaagcttgactacggatacatttaagaataacgttctttatgttaatgtaatctcatgattaagtca 2935935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 19388546 - 19388469
Alignment:
Q  33 ttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatct 109  Q
    |||| ||||||||||||||||||| ||| ||||||| ||||| | |||| ||||||||| ||||| || |||||||||    
T  19388546 ttttttattatcccaatttatatttaagcttgactacagatactattaaaaatagtgttctttatattgatgtaatct 19388469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 31190756 - 31190825
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaa 106  Q
    ||||||||||||||||| ||||| |||||||  ||||| ||||| |||| |||| |||||||||||||||    
T  31190756 tattatcccaatttatactaaagcttgactaaggatatatttaataataatgttatttatgttaatgtaa 31190825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16000008 - 15999886
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    |||||||||| || |||||| ||||   ||| |||  |||||||| |||| |||||||||||||||||  ||||  ||||| ||||| ||| |||| | |    
T  16000008 tcatcagtctgcatacataaaagtctcgacgctttattattatcctaattcatattaaagtttgactaaggatacatttaataatagcgttctttaaggt 15999909  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  15999908 aatgtaatctcatgattaagtca 15999886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 24443603 - 24443724
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||  |||  |||  ||| ||||| ||||||||||||| ||| |||  ||||  ||||||||||  ||| ||||||||    
T  24443603 tcatcagtctacatacataatagtctttacactttgttatcatccc-atttatattaaagcttggctacggatacatttaagaatatcgttctttatgtt 24443701  T
Q  100 aatgtaatcttataattaagtca 122  Q
    ||||||||||  | |||||||||    
T  24443702 aatgtaatctcgtgattaagtca 24443724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8757 - 8636
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    |||||| |||||| ||||| |||||  |||| |||  || |||| ||||||||||||||  ||||||| | ||| |||||||||||||||| ||||||||    
T  8757 tcatcaatctacatacatattagtctctacgctttattactatctcaatttatattaaaacttgactacaaatacttttaagaatagtgttctttatgtt 8658  T
Q  100 aatgtaatcttataattaagtc 121  Q
    |||||||||| || ||||||||    
T  8657 aatgtaatctcatgattaagtc 8636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 15526777 - 15526658
Alignment:
Q  3 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 101  Q
    ||||||||||| |||||||||||  |||| |||  ||||||| || |||||||||||| ||||||| | ||   ||||||||||||||| ||||||||||    
T  15526777 atcagtctacaaacataatagtctctacgctttattattatctca-tttatattaaagcttgactacatatgcatttaagaatagtgttctttatgttaa 15526679  T
Q  102 tgtaatcttataattaagtca 122  Q
    |||||||| || |||||||||    
T  15526678 tgtaatctcatgattaagtca 15526658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 11787611 - 11787491
Alignment:
Q  3 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 101  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| ||||||| |||||  ||||||||||  ||| |||||| |||    
T  11787611 atcagtcaacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacagatacatttaagaataacgttctttatgataa 11787512  T
Q  102 tgtaatcttataattaagtca 122  Q
    |||||||| || |||||||||    
T  11787511 tgtaatctcatgattaagtca 11787491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 25979006 - 25979126
Alignment:
Q  3 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 101  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||| ||| |||||| |||    
T  25979006 atcagtcaacatacataatagtctcgacgctttattattatcctaattcatattaaagcttgactacggatacatttaagaatagcgttctttatgataa 25979105  T
Q  102 tgtaatcttataattaagtca 122  Q
    |||||||| || |||||||||    
T  25979106 tgtaatctcatgattaagtca 25979126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 28088192 - 28088120
Alignment:
Q  52 atattaaag-tttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 122  Q
    ||||||||| ||||||||  ||| | ||||||||||||||| |||||| ||||||||||| || |||||||||    
T  28088192 atattaaagctttgactacggatctatttaagaatagtgttctttatgataatgtaatctcatgattaagtca 28088120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7865710 - 7865831
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  7865710 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 7865808  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  7865809 aatgtaatctcatgattaagtca 7865831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12765270 - 12765391
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  12765270 tcatcagtctacatacataatagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 12765368  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  12765369 aatgtaatctcatgattaagtca 12765391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20100519 - 20100641
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||||||||||||||||||||| ||||   |||  ||||||||||  ||| |||| |||    
T  20100519 tcatcagtctacatacataatagtcgtgacgctttattattatcccaatttatattaaagtttaactacgaatacatttaagaataacgttatttacgtt 20100618  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  20100619 aatgtaatctcatgattaagtca 20100641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5097677 - 5097555
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  |||||||| |||| ||||||||  ||||||| | |||  ||||||||||  ||| ||||||||    
T  5097677 tcatcagtctacatacataatagtctcgacgctttattattatcctaattcatattaaaacttgactacaaatacatttaagaataacgttctttatgtt 5097578  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  5097577 aatgtaatctcatgattaagtca 5097555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12704154 - 12704275
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| ||||| |||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||||||| |||||| |    
T  12704154 tcatcagtctacatacatagtagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaagaatagtgttctttatgat 12704252  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  12704253 aatgtaatctcatgattaagtca 12704275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 39535490 - 39535368
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||||||| |||||||||||||| ||  ||||  ||||||||||  ||| |||| | |    
T  39535490 tcatcagtctacatacataatagtcttgacgctttattattatcccaattcatattaaagtttgagtacggatacatttaagaatatcgttctttaaggt 39535391  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  39535390 aatgtaatctcatgattaagtca 39535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9812013 - 9812134
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| ||||| |||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||| ||||||||| |||||| |    
T  9812013 tcatcagtctacatacatagtagtctcgacgctttattattatcctaatt-atattaaagcttgactacggatacatttaataatagtgttctttatgat 9812111  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  9812112 aatgtaatctcatgattaagtca 9812134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31652060 - 31652181
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| ||||| |||||  || |||||  |||| || ||||||||| ||||| | ||| || || | ||||||||||| | || ||||||||    
T  31652060 tcatcagtctacatacatagtagtctctatgttttactattgtctcaatttataataaagctcgaccatggaaacttttaagaataatattctttatgtt 31652159  T
Q  100 aatgtaatcttataattaagtc 121  Q
    ||||||||||||  ||||||||    
T  31652160 aatgtaatcttacgattaagtc 31652181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26245128 - 26245006
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||  ||| ||||||||| |||| || |||||  ||||||||||   || |||||| |    
T  26245128 tcatcagtctacatacataatagtctcgacgctttattattatccttattcatattaaagcttgattacagatacatttaagaataacattctttatgat 26245029  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  26245028 aatgtaatctcatgattaagtca 26245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 26130006 - 26130091
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 122  Q
    ||||||||||||||||||||||| |||||||  ||||  |||||||| || ||| || ||||||| ||||| |||  |||||||||    
T  26130006 tattatcccaatttatattaaagcttgactacggatacatttaagaagagcgttcttaatgttaaagtaatattaggattaagtca 26130091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 83291 - 83412
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| ||||||||||| ||||  |||  ||||||| |||||||||||||| || |||||  |||| ||||||||||||| || ||| |||     
T  83291 tcatcagtctacatacataatagtctatacactttattattatctcaatttatattaaatttcgactacggatacttttaagaatagtattctttgtgtg 83390  T
Q  100 aatgtaatcttataattaagtc 121  Q
    ||| |||||| | |||||||||    
T  83391 aatttaatctcacaattaagtc 83412  T

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Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 40265 - 40386
Alignment:
Q  2 catcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtta 100  Q
    |||||||||||| |||||||||||    || |||  ||||||| ||||||||||||||| |||||||| ||||  ||||||||||| ||| |||| ||||    
T  40265 catcagtctacatacataatagtctcggcgctttattattatctcaatttatattaaagcttgactatggatacatttaagaatagcgttctttacgtta 40364  T
Q  101 atgtaatcttataattaagtca 122  Q
    ||||| ||| || |||||||||    
T  40365 atgtattctcatgattaagtca 40386  T

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Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 11806 - 11927
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    |||||| |||||| ||||||||||    ||| |||  |||||||| |||| ||||||||| ||||||| |||||  ||||||||||||||| |||||| |    
T  11806 tcatcaatctacatacataatagtttcgacgctttattattatcctaatt-atattaaagattgactacagatacatttaagaatagtgttctttatgat 11904  T
Q  100 aatgtaatcttataattaagtca 122  Q
    |||||||||| || |||||||||    
T  11905 aatgtaatctcatgattaagtca 11927  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 45226 - 45346
Alignment:
Q  3 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaa 101  Q
    ||||||| ||| |||||||||||   ||| |||  |||||||| |||| ||||||||| |||||||  ||||  ||||||||||| ||| |||||| |||    
T  45226 atcagtcaacatacataatagtctcgacgctttattattatcctaattaatattaaagcttgactacggatacatttaagaatagcgttctttatgataa 45325  T
Q  102 tgtaatcttataattaagtca 122  Q
    |||||||| || |||||||||    
T  45326 tgtaatctcatgattaagtca 45346  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 53791 - 53682
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    |||||| |||||| |||||||||||   ||  |||  |||||||| |||| ||||||||| |||| ||  ||||  ||||||||||||||| ||||||||    
T  53791 tcatcaatctacatacataatagtcttgacactttattattatcctaattcatattaaagcttgaatacggatacatttaagaatagtgttctttatgtt 53692  T
Q  100 aatgtaatct 109  Q
    ||||||||||    
T  53691 aatgtaatct 53682  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 8727653 - 8727568
Alignment:
Q  38 tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgttaatgtaatcttataattaagtca 122  Q
    ||||||| ||||| ||||||||||||||||| |||||  ||| ||||||  ||| |||||||||| |||||||||| ||| |||||    
T  8727653 tattatctcaattcatattaaagtttgactacagatagatttcagaataacgttctttatgttaaagtaatcttatgatttagtca 8727568  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 633960 - 633840
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttatgtt 99  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||  ||| ||||||||| |||||||  ||||  ||||| |||| |||| |||||| |    
T  633960 tcatcagtctacatacataatagtctcgacgctttgttattatccttattcatattaaagcttgactacggatacatttaaaaataatgttctttatgat 633861  T
Q  100 aatgtaatcttataattaagt 120  Q
    ||| |||||| || |||||||    
T  633860 aatttaatctcatgattaagt 633840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18835374 - 18835254
Alignment:
Q  3 atcagtctacacacataatagtcaatacgtttttatattatcccaatttatattaaagtttgactatagatatttttaagaatagtgttttt-atgttaa 101  Q
    ||||||||||| |||||||||||   | | |||  ||||||  ||||  ||||||||| | ||||| |||||| ||||||||||  |||||| |||||||    
T  18835374 atcagtctacatacataatagtctcgatgctttattattatttcaatccatattaaagctggactacagatatatttaagaataacgttttttatgttaa 18835275  T
Q  102 tgtaatcttataattaagtca 122  Q
    |||||||| || |||||||||    
T  18835274 tgtaatctcatgattaagtca 18835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22659770 - 22659894
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacgtttttatattatccca-atttatattaaag-tttgactatagatatttttaagaatagtgtt-tttatg 97  Q
    ||||||||||||| |||||||||||   ||| |||  ||||||||   ||| ||||||||| ||||||||  ||||  ||||||||||||||| ||||||    
T  22659770 tcatcagtctacatacataatagtcttgacgctttattattatcctttattcatattaaagctttgactacggatacatttaagaatagtgttctttatg 22659869  T
Q  98 ttaatgtaatcttataattaagtca 122  Q
     ||||||||||| || |||||||||    
T  22659870 ataatgtaatctcatgattaagtca 22659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20539673 - 20539798
Alignment:
Q  1 tcatcagtctacacacataatagtcaatacg--ttttta-tattatcccaatttatattaaagtttgactatagatatttttaagaatagtgtt-tttat 96  Q
    ||||||||||||| ||||||| ||| || ||  || ||| ||||||||||||||| ||||||| || |||| | || | ||||||||||  ||| |||||    
T  20539673 tcatcagtctacatacataatcgtctatgcgctttattattattatcccaatttacattaaagctttactacaaatgtatttaagaataacgttctttat 20539772  T
Q  97 gttaatgtaatcttataattaagtca 122  Q
    ||||||||||||  || |||||||||    
T  20539773 gttaatgtaatcacatgattaagtca 20539798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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