View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_9 (Length: 467)
Name: NF0718_low_9
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 10008650 - 10009010
Alignment:
| Q |
15 |
acatcatccacaatccctcataccaaaatgatatacattttgcacaatcaactcaaacaaaaatgagaatcagaccttttcagtatttttcacagactgg |
114 |
Q |
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| T |
10008650 |
acatcatccacaatccctcataccaaaatgatatacattttgcacaatcaactcaaacaaaaatgagaatcagaccttttcagtatttttcacagactgg |
10008749 |
T |
|
| Q |
115 |
ctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaaatcatcttgaagctttctgaggagtataagtgtcaacaaag |
214 |
Q |
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| T |
10008750 |
ctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaaatcatcttgaagctttctgaggagtataagtgtcaacaaag |
10008849 |
T |
|
| Q |
215 |
aagtgaaaaaattgagagaacaatgaaaaaacaattcatatggttaaaagcaaagcattgagagagcaaacacaaatgacaataacaattagctatataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10008850 |
aagtgaaaaaattgagagaacaatgaaaaaacaattcatatggttaaaagcaaagcattgagagagcaaacacaaatgacaataacaattagctatataa |
10008949 |
T |
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| Q |
315 |
tacattttttgcatataattcaatagcaactacgagagtattggtatcaaaatataatgat |
375 |
Q |
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| T |
10008950 |
tacattttttgcatataattcaatagcaactacgagagtattggtatcaaaatataatgat |
10009010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 74 - 375
Target Start/End: Complemental strand, 52656781 - 52656475
Alignment:
| Q |
74 |
aaaatgagaatcagaccttttcagtatttttcacagactggctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaa |
173 |
Q |
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| T |
52656781 |
aaaatgagaatcagaccttttcagtatttttcacagactggctcatcatgagactactctctttgagttgttttgccaacaccaccatctcatctgtcaa |
52656682 |
T |
|
| Q |
174 |
atcatcttgaagctttctgaggagtataagtgtcaacaaagaagtgaaaaaattgagagaacaatgaaaaaacaattcatatggttaaaagcaaagcatt |
273 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
52656681 |
atcatcttgaagctttctgaggaatataagtttcaacaaagaagtgaaaaaattgacagaacagtgaaaaaacaattcatatagttaaaagcaaagcatt |
52656582 |
T |
|
| Q |
274 |
gagagagcaaacacaaatga------caataacaattagctatataatacattttttgcatataattcaatagcaactacgagagtattggtatcaaaat |
367 |
Q |
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| T |
52656581 |
gagagagcaaacacaaatgacaatgacaataacaattagctatctaaaaca-tttttgcatataattcaatagcaactgcgagagtattggtatcaaaac |
52656483 |
T |
|
| Q |
368 |
ataatgat |
375 |
Q |
| |
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|||||||| |
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|
| T |
52656482 |
ataatgat |
52656475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 52656871 - 52656820
Alignment:
| Q |
15 |
acatcatccacaatccctcata-ccaaaatgatatacattttgcacaatcaa |
65 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
52656871 |
acatcatccacaatccctcattgccaaaatgagatacattttgcacaatcaa |
52656820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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