View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_high_10 (Length: 350)
Name: NF0719_high_10
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 41523522 - 41523785
Alignment:
| Q |
3 |
ctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatagaataaagatgtgtttcaatagtc |
102 |
Q |
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| T |
41523522 |
ctacttccatttccataggaaaatcagtttcagctaaaatgaaaaagtcaatagcttgcttggattgagtaacatagaataaagatgtgtttcaatagtc |
41523621 |
T |
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| Q |
103 |
aatttataaaacaagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaatatttatcaagtaaca |
202 |
Q |
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| T |
41523622 |
aatttataaaacaagaaaatcatttaccagtccaatctaccaagcaatctgatctaacatttatctgatcacacataaattcaatatttatcaagtaaca |
41523721 |
T |
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| Q |
203 |
ttaaaaaatgcatatctttgtaggaataagatatgcatgcataatttccatatacctgatgatg |
266 |
Q |
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| T |
41523722 |
ttaaaaaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatg |
41523785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 41514656 - 41514834
Alignment:
| Q |
89 |
gtgtttcaatagtcaatttataaaa-caagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
187 |
Q |
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| T |
41514656 |
gtgtttcaatagtcaatctataaaaacaataaaatcatgtaccaggccaatctacctagcaatctgatcaaacatttatccgatcacacataaattcaat |
41514755 |
T |
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| Q |
188 |
atttatcaagtaacattaaaaaatgcatatctttgtaggaataagatatgcatgcataatttccatatacctgatgatg |
266 |
Q |
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| T |
41514756 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatg |
41514834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41514414 - 41514502
Alignment:
| Q |
1 |
cgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatagaataaagatg |
89 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
41514414 |
cgctacttccatttccataggaaaatcagtttcagctaaaatgaaagagtcaatagcttgcttgggttgagtaacatgtaataaagatg |
41514502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 41469065 - 41469105
Alignment:
| Q |
226 |
gaataagatatgcatgcataatttccatatacctgatgatg |
266 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||| |
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| T |
41469065 |
gaataatagatgcatgcataatttcgatatacctgatgatg |
41469105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 41703312 - 41703284
Alignment:
| Q |
238 |
catgcataatttccatatacctgatgatg |
266 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41703312 |
catgcataatttccatatacctgatgatg |
41703284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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