View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0719_high_13 (Length: 296)

Name: NF0719_high_13
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0719_high_13
NF0719_high_13
[»] chr1 (17 HSPs)
chr1 (7-271)||(38685259-38685523)
chr1 (7-271)||(23480968-23481232)
chr1 (11-178)||(11930847-11931014)
chr1 (71-242)||(5429191-5429362)
chr1 (61-256)||(23263809-23264003)
chr1 (90-181)||(41531758-41531849)
chr1 (98-193)||(37891686-37891781)
chr1 (129-256)||(38508602-38508729)
chr1 (129-193)||(2045400-2045464)
chr1 (236-271)||(5429391-5429426)
chr1 (106-193)||(35594017-35594104)
chr1 (124-223)||(50708754-50708853)
chr1 (222-271)||(9825651-9825700)
chr1 (124-193)||(39513407-39513476)
chr1 (124-193)||(45503684-45503753)
chr1 (129-193)||(29245338-29245402)
chr1 (124-184)||(48650897-48650957)
[»] chr8 (16 HSPs)
chr8 (7-271)||(1199360-1199624)
chr8 (103-271)||(604178-604346)
chr8 (103-271)||(44434240-44434407)
chr8 (103-271)||(44429483-44429650)
chr8 (140-270)||(30437156-30437286)
chr8 (103-205)||(44430676-44430778)
chr8 (7-115)||(30437280-30437388)
chr8 (189-270)||(1852217-1852298)
chr8 (109-160)||(31378850-31378901)
chr8 (93-211)||(4969601-4969719)
chr8 (93-211)||(9885732-9885850)
chr8 (124-223)||(19961507-19961606)
chr8 (98-193)||(37589436-37589531)
chr8 (202-249)||(44433318-44433365)
chr8 (129-193)||(14994631-14994695)
chr8 (129-181)||(16468826-16468878)
[»] chr7 (18 HSPs)
chr7 (7-271)||(11642436-11642700)
chr7 (7-271)||(45286273-45286537)
chr7 (22-271)||(16375750-16375999)
chr7 (49-262)||(45418593-45418806)
chr7 (45-271)||(9141303-9141528)
chr7 (99-252)||(18415482-18415635)
chr7 (124-244)||(45823699-45823819)
chr7 (111-163)||(44584518-44584570)
chr7 (109-154)||(15494681-15494726)
chr7 (129-193)||(7893265-7893329)
chr7 (129-193)||(7893640-7893704)
chr7 (129-193)||(22006489-22006553)
chr7 (124-223)||(45115708-45115807)
chr7 (111-190)||(48844469-48844548)
chr7 (129-163)||(30068151-30068185)
chr7 (129-163)||(45137823-45137857)
chr7 (111-192)||(3595550-3595631)
chr7 (124-193)||(32660105-32660174)
[»] chr5 (9 HSPs)
chr5 (7-271)||(19123013-19123277)
chr5 (7-271)||(14164519-14164783)
chr5 (34-271)||(31486301-31486538)
chr5 (11-176)||(7782044-7782209)
chr5 (99-252)||(21000842-21000995)
chr5 (185-271)||(31487316-31487402)
chr5 (129-193)||(32674781-32674845)
chr5 (98-181)||(5087518-5087601)
chr5 (124-181)||(14988259-14988316)
[»] scaffold0013 (2 HSPs)
scaffold0013 (7-271)||(104489-104753)
scaffold0013 (7-271)||(127138-127402)
[»] chr6 (9 HSPs)
chr6 (7-271)||(17905790-17906054)
chr6 (78-174)||(8560329-8560425)
chr6 (150-271)||(1394014-1394135)
chr6 (11-84)||(8560810-8560883)
chr6 (98-194)||(25975630-25975726)
chr6 (111-194)||(3591090-3591173)
chr6 (129-196)||(7018316-7018383)
chr6 (106-181)||(8498044-8498119)
chr6 (98-223)||(25971161-25971286)
[»] chr3 (25 HSPs)
chr3 (7-271)||(2701973-2702240)
chr3 (7-195)||(14604151-14604339)
chr3 (88-271)||(53047225-53047408)
chr3 (162-264)||(17757668-17757770)
chr3 (162-264)||(19058988-19059090)
chr3 (99-256)||(21799785-21799944)
chr3 (124-244)||(12813242-12813362)
chr3 (129-223)||(18198600-18198694)
chr3 (129-193)||(26951029-26951093)
chr3 (98-142)||(29692953-29692997)
chr3 (98-142)||(29693367-29693411)
chr3 (129-193)||(36091579-36091643)
chr3 (106-190)||(36155431-36155515)
chr3 (129-228)||(7548901-7549000)
chr3 (98-193)||(18256099-18256194)
chr3 (98-181)||(29679394-29679477)
chr3 (124-223)||(31487116-31487215)
chr3 (129-163)||(18986426-18986460)
chr3 (129-191)||(36091956-36092018)
chr3 (124-193)||(18201251-18201320)
chr3 (124-193)||(35716201-35716270)
chr3 (124-193)||(49562560-49562629)
chr3 (99-163)||(26701227-26701291)
chr3 (129-193)||(36947307-36947371)
chr3 (132-180)||(44703174-44703222)
[»] scaffold0059 (1 HSPs)
scaffold0059 (7-271)||(71312-71576)
[»] chr4 (18 HSPs)
chr4 (7-271)||(29968081-29968340)
chr4 (7-271)||(2479345-2479609)
chr4 (7-264)||(41851187-41851445)
chr4 (7-261)||(18000596-18000850)
chr4 (103-271)||(47428088-47428256)
chr4 (107-273)||(10466643-10466800)
chr4 (99-252)||(50232099-50232253)
chr4 (61-256)||(56475937-56476132)
chr4 (98-211)||(4882164-4882277)
chr4 (109-154)||(23143716-23143761)
chr4 (129-193)||(41860024-41860088)
chr4 (129-193)||(52682242-52682306)
chr4 (124-223)||(16908944-16909043)
chr4 (124-223)||(21382529-21382628)
chr4 (99-173)||(54568739-54568813)
chr4 (132-181)||(5454118-5454167)
chr4 (124-193)||(30388181-30388250)
chr4 (123-211)||(9039306-9039394)
[»] chr2 (8 HSPs)
chr2 (7-261)||(20640124-20640378)
chr2 (129-193)||(13907771-13907835)
chr2 (106-175)||(27534482-27534551)
chr2 (124-193)||(35432326-35432395)
chr2 (129-181)||(9361854-9361906)
chr2 (129-193)||(26455416-26455480)
chr2 (129-193)||(26455791-26455855)
chr2 (129-193)||(40605253-40605317)
[»] scaffold1155 (1 HSPs)
scaffold1155 (107-271)||(794-959)
[»] scaffold0345 (1 HSPs)
scaffold0345 (107-271)||(9258-9423)
[»] scaffold0105 (1 HSPs)
scaffold0105 (107-271)||(29557-29722)
[»] scaffold0296 (1 HSPs)
scaffold0296 (111-163)||(974-1026)
[»] scaffold0097 (1 HSPs)
scaffold0097 (124-223)||(52038-52137)
[»] scaffold0048 (1 HSPs)
scaffold0048 (99-190)||(43111-43202)
[»] scaffold0007 (1 HSPs)
scaffold0007 (132-180)||(79377-79425)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 38685259 - 38685523
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38685259 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaagtttcaacg 38685358  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38685359 aagataattttctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtttatatctaccaacgcctgtattt 38685458  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  38685459 tctcacgaacagttgtatgttgttgtttaaagagttacatccagagaaggactaaaaatattgat 38685523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 23481232 - 23480968
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| ||| ||||||| |||||||||    
T  23481232 aggggagggacatttccggaagtaatgttggtgatccggtttttgtatccaggctatctctaccgccttcagatgtcaggatcccctttaagtttcaacg 23481133  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  23481132 aagacaaattcctttgattgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattt 23481033  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||| | |||||||||||||| |  || ||||||||||||||||||||||||||||| ||||||    
T  23481032 tctcaaggacagttgtatgttgctatttcaagagttacatccagagaaggactaaagatattgat 23480968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 11930847 - 11931014
Alignment:
Q  11 gagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacgaaga 110  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  11930847 gagggttatttccggaagtaatgttggtgatcaggtttttgtatccatgttatctctatcgccttcagatgtcaggattccctttaagtttcaacgaaga 11930946  T
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgt 178  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  11930947 caatttcctttgattgtatcatttgcaatgataattaacaaaagtcaagggcagtcgcttaaacatgt 11931014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 5429191 - 5429362
Alignment:
Q  71 gccttcagatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgctt 170  Q
    |||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5429191 gccttcagatgttagaattccctttaagtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgctt 5429290  T
Q  171 aaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagtt 242  Q
    |||||||||||||||||||||||||| ||| ||||||||||   ||||||||| |||| || || |||||||    
T  5429291 aaacatgttggtgtatatctaccaacacctgtattttctcatagacagttgtacgttgctgtttcaagagtt 5429362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 256
Target Start/End: Original strand, 23263809 - 23264003
Alignment:
Q  61 tatctatatcgccttcagatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagg 160  Q
    ||||| |||| |||||||||||| | ||||| ||||  |||||||||| |||| | |||||  |||| |||||||||||||| || |||||||||||||     
T  23263809 tatctctatctccttcagatgtcgtaattccttttaaatttcaacgaaaacaagtacctttagctgtgtcatttgcaatgactattaacaaaagtcaaga 23263908  T
Q  161 gcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaagg 256  Q
    |||||| ||||| |||||||| |  ||||| ||||||| | | |||||||||  ||| |||||| ||| || ||| ||||||||||| || |||||    
T  23263909 gcagtcacttaagcatgttggagcgtatctcccaacgcatgt-ttttctcacatacaattgtatattgctgtttagagagttacatctagggaagg 23264003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 41531849 - 41531758
Alignment:
Q  90 ccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    ||||||| |||||||||||| ||||||||  ||  ||| || || || ||||| ||||| ||||||||||||||||||||||| ||||||||    
T  41531849 ccctttaagtttcaacgaaggcaatttccactggttgtttcgttcgctatgactatcaataaaagtcaagggcagtcgcttaatcatgttgg 41531758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 37891781 - 37891686
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||| ||||| ||| |||| |||||||||||||| || ||||| ||||| || |||||  | ||| |||||||||| ||||||||    
T  37891781 gtttaaacgaagacagtttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctacc 37891686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 256
Target Start/End: Original strand, 38508602 - 38508729
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttg 228  Q
    |||||||| ||| | |||||||||||  |||||||||| ||   |||||| ||||||||||||||||||||| | ||||| || | ||| || ||||| |    
T  38508602 tcatttgcgatgcctatcaacaaaagctaagggcagtcactggcacatgtcggtgtatatctaccaacgcctgtcttttcacatggacaattatatgtgg 38508701  T
Q  229 ttgcttaaagagttacatccagagaagg 256  Q
    |||  |  ||||||||||| ||||||||    
T  38508702 ttgtgtcgagagttacatcaagagaagg 38508729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 2045464 - 2045400
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  2045464 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 2045400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 5429391 - 5429426
Alignment:
Q  236 aagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5429391 aagagttacatccagagaaggactaaagatattgat 5429426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 35594104 - 35594017
Alignment:
Q  106 gaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||| ||  |||| |||||||||||||| || ||||| |||||  | |||||| | |||||||||||||| ||||||||    
T  35594104 gaaggcaatttccgttatctgtctcatttgcaatgactattaacaagagtcagagtcagtcgttgaaacatgttggtgtttatctacc 35594017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 50708754 - 50708853
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  50708754 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 50708853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 9825651 - 9825700
Alignment:
Q  222 tatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||||||  ||||||||||||||||||||| |||| |||| ||||||    
T  9825651 tatgttgttgtataaagagttacatccagagaatgactgaagatattgat 9825700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 39513476 - 39513407
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  39513476 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 39513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 45503753 - 45503684
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  45503753 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 45503684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 29245338 - 29245402
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  29245338 tcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 29245402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 48650897 - 48650957
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgt 184  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  |||||||||||||    
T  48650897 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgt 48650957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 1199360 - 1199624
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  1199360 aggggagggtcatttccggaagtaaggttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcaggattccctttaagtttcaacg 1199459  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||| ||| |||||    
T  1199460 aagacaatttcctttgactatatcatttgcaatgacaattaacaaaagtctagagcagtcgcttaaacatgtttgtgtatatctaccaacacctgtattt 1199559  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||||||||||||||||| || || |||||||||||||||||||| |||||||| ||||||    
T  1199560 tctcacgaacagttgtatgttgctgtttcaagagttacatccagagaagtactaaagatattgat 1199624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 604346 - 604178
Alignment:
Q  103 aacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  604346 aacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaatatgttggtgtatatctaccaacacctgt 604247  T
Q  203 attttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| ||| |||||||||||||| || || |||||||||||||| ||||||| |||||| ||||||    
T  604246 attttcttacggacagttgtatgttgctgtttcaagagttacatccaaagaaggattaaagatattgat 604178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 44434240 - 44434407
Alignment:
Q  103 aacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctat 202  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | | |    
T  44434240 aacgaagacaatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctatcaacacttgt 44434339  T
Q  203 attttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    | ||||||||| ||||||||||||||||  || |||||||||||||| ||||||| |||||| ||||||    
T  44434340 actttctcacggacagttgtatgttgttatttcaagagttacatccaaagaagga-taaagatattgat 44434407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 44429483 - 44429650
Alignment:
Q  103 aacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctat 202  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||| |||| | | |    
T  44429483 aacgaagacaaattcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggcggtcgcttaaacatgttggtatatatctatcaacacttgt 44429582  T
Q  203 attttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||| | || ||||||||| ||||||    
T  44429583 attttctcacgcacaattgtatgttgttgtttcaagagttacatcca-aaaaagactaaagatattgat 44429650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 30437286 - 30437156
Alignment:
Q  140 gacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaaga 239  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||| |  || ||||    
T  30437286 gacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcacagacagttgtatgttgctatttcaaga 30437187  T
Q  240 gttacatccagagaaggactaaagacattga 270  Q
    ||||||||||||||||||||||||| |||||    
T  30437186 gttacatccagagaaggactaaagatattga 30437156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 44430676 - 44430778
Alignment:
Q  103 aacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctat 202  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |    
T  44430676 aacgaagacaatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggcggtcgcttaaacatgttggtgtatatctatcaacacctgt 44430775  T
Q  203 att 205  Q
    |||    
T  44430776 att 44430778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 30437388 - 30437280
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||| |    
T  30437388 aggggagggtcatttatggaagtaatgttggtgatcaggtttttgtatcaaggttatctatatcgccttcagatgtcaggattccctttaagtttcaaag 30437289  T
Q  107 aagacaatt 115  Q
    |||||||||    
T  30437288 aagacaatt 30437280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 1852217 - 1852298
Alignment:
Q  189 ctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattga 270  Q
    |||||||| ||| |||||||||| | ||||||||||||||||| || |||||||||||| |||||||||||||||| |||||    
T  1852217 ctaccaacacctgtattttctcatggacagttgtatgttgttgtttcaagagttacatcaagagaaggactaaagatattga 1852298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 31378850 - 31378901
Alignment:
Q  109 gacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagg 160  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||| |||||    
T  31378850 gacaatttcctttgtctgtatgttttgcaatgacaatcaacaaaagccaagg 31378901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 4969601 - 4969719
Alignment:
Q  93 tttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctac 192  Q
    |||| ||||| | |||| |||||||| ||| |||| || ||||||||||| || ||||||||| |||| ||||| ||||||||||| || || ||| | |    
T  4969601 tttaagtttcgaagaaggcaatttccattggctgtttcttttgcaatgactattaacaaaagttaaggccagtctcttaaacatgtgggagtttatttgc 4969700  T
Q  193 caacgcctatattttctca 211  Q
    || ||||| | ||||||||    
T  4969701 catcgcctgttttttctca 4969719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 9885850 - 9885732
Alignment:
Q  93 tttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctac 192  Q
    |||| ||||| | |||| |||||||| ||| |||| || |||||| |||| || |||||||||||||| ||||| ||||||||||| || || ||| | |    
T  9885850 tttaagtttcgaagaaggcaatttccattggctgtttcttttgcagtgactattaacaaaagtcaaggccagtctcttaaacatgtgggagtttatttgc 9885751  T
Q  193 caacgcctatattttctca 211  Q
    || ||||| | ||||||||    
T  9885750 catcgcctgttttttctca 9885732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 19961507 - 19961606
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  19961507 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 19961606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 37589436 - 37589531
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||||| ||  |||| |||||||||||||| || ||||| ||||| || |||||  | ||| |||||||| | ||||||||    
T  37589436 gtttaaacgaagacaatttccgttatctgtctcatttgcaatgactattaacaagagtcagggtcagtctatgaaaaatgttggtatctatctacc 37589531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 44433318 - 44433365
Alignment:
Q  202 tattttctcacgaacagttgtatgttgttgcttaaagagttacatcca 249  Q
    |||||||||||| ||| ||||||||||||| || ||||||||||||||    
T  44433318 tattttctcacgcacaattgtatgttgttgtttcaagagttacatcca 44433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 14994695 - 14994631
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||  || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  14994695 tcatttgcaatgattattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 14994631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 16468878 - 16468826
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    |||||||| |||||||||||||| ||||| ||||| || |||||| |||||||    
T  16468878 tcatttgccatgacaatcaacaagagtcaggggcaatcacttaaaaatgttgg 16468826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 11642700 - 11642436
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  11642700 aggggagggtcatttccgaaaataatgttggtgatcaagtttttgtatccaggctatctatatcgccttcagatgtcaggattccatttaggtttcaacg 11642601  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  11642600 aagacaatttcctttgactgtatcatttgcaatgacaattaacaaaattcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattt 11642501  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| |||||||||||||| || || ||||||||||||||||||||||||||| | ||||||    
T  11642500 tctcacggacagttgtatgttgctgtttcaagagttacatccagagaaggactaaatatattgat 11642436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 45286273 - 45286537
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||| |||||||||||| |  ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||| |||||||||    
T  45286273 aggggtgggtcatttccgaaactaatgttggtgatcaggtttttgtatccatgttatctatatcgccttcagatgtaaggattccctttaagtttcaacg 45286372  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  45286373 aagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagttaaaggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattt 45286472  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  45286473 tctcacggacagttgtatgttgttgtttcaagagttacatccagagaaggactaaagatattgat 45286537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 16375999 - 16375750
Alignment:
Q  22 ccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacgaagacaatttccttt 121  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  16375999 ccggaagtaatgttggtgatcaggtttttgtttccagtctatctctattgccttcagatgttaggattccctttaagtttcaacgaagacaatttccttt 16375900  T
Q  122 gactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttg 221  Q
    |||| ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||| |||    
T  16375899 gactttatcatttgcaatgacaattaaaaaaagtcaagcgcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcaaggacaattg 16375800  T
Q  222 tatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||| ||||| || ||||||||||||||||||||||||||||| ||||||    
T  16375799 tatgatgttgtttcaagagttacatccagagaaggactaaagatattgat 16375750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 49 - 262
Target Start/End: Complemental strand, 45418806 - 45418593
Alignment:
Q  49 ttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaa 148  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  45418806 ttgtatccaggctatctatatcgccttcagatgtcaggattccctttaagtttcaacgaagacaatttgctttgactgtatcatttgcaatgacaattaa 45418707  T
Q  149 caaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatcc 248  Q
    |||||||||||  |||||||||||||||| || ||||||||||||||| ||| |||||||||||| |||||||||||||| || || |||||||||||||    
T  45418706 caaaagtcaagtccagtcgcttaaacatgatgatgtatatctaccaacacctgtattttctcacggacagttgtatgttgctgtttcaagagttacatcc 45418607  T
Q  249 agagaaggactaaa 262  Q
    || |||||||||||    
T  45418606 agcgaaggactaaa 45418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 9141528 - 9141303
Alignment:
Q  45 gtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaa 144  Q
    ||||||||||||| ||||||||||| ||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  9141528 gtttttgtatccaagctatctatat-gcctttagatgtcaggatttcctttaagtttcaacgaagacaatttcctttgactgtatcatttgcaatgataa 9141430  T
Q  145 tcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttac 244  Q
    | |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| | ||| || ||||||| || || || ||||||    
T  9141429 ttaacaaaagtcaagggcagtcacttaagcatgttggtgtatatctaccaacacctgtattttctcatggacatttctatgttgctgtttcaaaagttac 9141330  T
Q  245 atccagagaaggactaaagacattgat 271  Q
    ||| |||||||||||||||| ||||||    
T  9141329 atctagagaaggactaaagatattgat 9141303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 18415635 - 18415482
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgc 198  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| || || ||  || ||||||| |||||||| ||  |||    
T  18415635 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccggcgc 18415536  T
Q  199 ctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagag 252  Q
    || | |||||||||| ||| |||||||||| || ||  ||||||||||| ||||    
T  18415535 ctgttttttctcacggacaattgtatgttgctgtttcgagagttacatctagag 18415482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 45823699 - 45823819
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| |||||||||||||||||||| || ||   ||||||||||||||| |||||||||||| |||||||||| | |||||| ||    
T  45823699 ctgtgtcatttgcaatgactatcaacaaaagtcaagggcaatcactcggacatgttggtgtatacctaccaacgcctgtattttctcatggacagttata 45823798  T
Q  224 tgttgttgcttaaagagttac 244  Q
    ||| | || || |||||||||    
T  45823799 tgtagctgtttcaagagttac 45823819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 44584518 - 44584570
Alignment:
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggca 163  Q
    ||||||||||||||||| |||||||||||||| || || ||||||||||||||    
T  44584518 caatttcctttgactgtttcatttgcaatgactattaataaaagtcaagggca 44584570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 15494726 - 15494681
Alignment:
Q  109 gacaatttcctttgactgtatcatttgcaatgacaatcaacaaaag 154  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||    
T  15494726 gacaatttcctttgtctgtatgttttgcaatgacaatcaacaaaag 15494681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 7893265 - 7893329
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  7893265 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 7893329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 7893640 - 7893704
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  7893640 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 7893704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 22006489 - 22006553
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  22006489 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 22006553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 45115708 - 45115807
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  45115708 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 45115807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 48844548 - 48844469
Alignment:
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatct 190  Q
    |||||||||||| |  | |||||||| ||||| |||||||||||||||| ||| || || ||||| | ||||||||||||    
T  48844548 caatttcctttggcaatctcatttgcgatgactatcaacaaaagtcaagagcaatcactgaaacacgatggtgtatatct 48844469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 30068151 - 30068185
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggca 163  Q
    |||||||||||||| ||||||||||||||||||||    
T  30068151 tcatttgcaatgacgatcaacaaaagtcaagggca 30068185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 45137823 - 45137857
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggca 163  Q
    |||||||||||||| ||||||||||||||||||||    
T  45137823 tcatttgcaatgacgatcaacaaaagtcaagggca 45137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 3595631 - 3595550
Alignment:
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctac 192  Q
    |||||||| ||  |||| |||||||||||||| || ||||| ||||| || |||||| | |||||||||||| | |||||||    
T  3595631 caatttccgttatctgtctcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtatctatctac 3595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 32660105 - 32660174
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  32660105 ctgtctcatttgcaatgactattaacaagagtcatggtcagtcgctagaacatgttggtgtctacctacc 32660174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 19123013 - 19123277
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  19123013 aggggagggtcattttcggaagtaatgttggtgatcaagtttttgtatccaggctctctatatcgccttcagatgtcaggattccctttaaatttcaacg 19123112  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  19123113 aagacaatttcctttgactgtatcatttgcaatgacagttaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattt 19123212  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||||||    
T  19123213 tctcacggacagttgtatgttgctgtttcaagagttatatccagagaaggactaaagatattgat 19123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 14164783 - 14164519
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||| |||||||||    
T  14164783 aggggagggtcatttccggaagtaatgttggtgatcaggtttttgtatccagactatctatatcgccttcaaatgtaaggattccctttaagtttcaacg 14164684  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  14164683 aagacaatttcctttgaatgtatcatttgcaatgacaattaacaaaagtcaagggtagtcgcttaaacatgttgttgtatatctaccaacacctgtattt 14164584  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| |||||||||||||| || || || |||||||||||||||||||||||||| ||||||    
T  14164583 tctcacggacagttgtatgttgctgtttcaaaagttacatccagagaaggactaaagatattgat 14164519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 34 - 271
Target Start/End: Complemental strand, 31486538 - 31486301
Alignment:
Q  34 ttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  31486538 ttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcagtattcccttaaagtttcaacgaagataattttctttgactgtatcatt 31486439  T
Q  134 tgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgct 233  Q
    || ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |||||||||||||| |  |    
T  31486438 tgaaatgacaattaacaaaagtcaagggcagtcgcttaaacatgtttgtgtatatctaccaacacctgtattttctcgcggacagttgtatgttgctttt 31486339  T
Q  234 taaagagttacatccagagaaggactaaagacattgat 271  Q
    | ||||||||||||||||||||||||||||| ||||||    
T  31486338 tcaagagttacatccagagaaggactaaagatattgat 31486301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 7782044 - 7782209
Alignment:
Q  11 gagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacgaaga 110  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  7782044 gagggttatttccgaaagtaatgttggtgatcaggtttttgtatccatgttatctctatcgccttcagatgtcaggattccctttaagtttcaacgaaga 7782143  T
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacat 176  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  7782144 caatttcctttgattgtatcatttgcaatgataattaacaaaagtcaagggcattcgcttaaacat 7782209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 21000995 - 21000842
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgc 198  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| || || ||  || ||||||| |||||||| ||  |||    
T  21000995 tttcaaagaaaacaatttcctttgcctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccggcgc 21000896  T
Q  199 ctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagag 252  Q
    || | |||||||||| ||| |||||||||| || ||  ||||||||||| ||||    
T  21000895 ctgttttttctcacggacaattgtatgttgctgtttcgagagttacatctagag 21000842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 31487402 - 31487316
Alignment:
Q  185 atatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||    
T  31487402 atatctaccaacacctgtattttctcacggacagttgtatgttgttgtttcaagagttacatccaaagaaggactaaagatattgat 31487316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 32674781 - 32674845
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  32674781 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 32674845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 5087518 - 5087601
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    ||||||||||||||||||| | |||| ||| || ||||| ||||| ||||| | || |||||| || || ||||||||||||||    
T  5087518 gtttcaacgaagacaattttcattgattgtttcctttgctatgactatcaatataattcaaggacaatcacttaaacatgttgg 5087601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 14988259 - 14988316
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    |||| |||||||| |||||||||||||| ||||||| ||| || |||||| |||||||    
T  14988259 ctgtttcatttgccatgacaatcaacaagagtcaagagcaatcacttaaaaatgttgg 14988316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 104489 - 104753
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||    
T  104489 aggggagagtcatttcctaaagtaatgttggtgatcaggtttttgtatccaggctatctatatcaccttcagatgtcaggattgcctttaagtttcaacg 104588  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  104589 aaaacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattt 104688  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| ||||||||||||| ||| || |||||| |||||||||||||||||||||| ||||||    
T  104689 tctcacggacagttgtatgttattgtttcaagagtaacatccagagaaggactaaagatattgat 104753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 127138 - 127402
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||| |||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||     
T  127138 aggggagagtcatttccgaaaataatgttggtgatcaagtttttgtatccaggctatctatatcgccttcagatgtcaggattgcatttaagtttcaaca 127237  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  127238 aagaccatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttgatgtatatctaccaacacctatattt 127337  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||  ||||||||||||| ||| || |||||| |||||||||||||||||||||| ||||||    
T  127338 tctcacagacagttgtatgttattgtttcaagagtaacatccagagaaggactaaagatattgat 127402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 17906054 - 17905790
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||     
T  17906054 aggggagggtcatttccggaagtaatgttggtgatcaggtttttgtatccatgctaactatatcgccttcagatgtcaggattccctttaagtttcaact 17905955  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  17905954 acgacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattt 17905855  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||  ||||||||||||||||| || || ||||||||| | |||| ||||| ||| ||||||    
T  17905854 tctcacagacagttgtatgttgttgtttcaacagttacatcaaaagaatgactacagatattgat 17905790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 8560425 - 8560329
Alignment:
Q  78 gatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaac 174  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8560425 gatgtcaggattccctttaagtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaac 8560329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 1394014 - 1394135
Alignment:
Q  150 aaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatcca 249  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| || |||||||||||| |    
T  1394014 aaaagtcaagagcagtcacttaaacatgttggtgtatatctaccaacacctatattttctcacggacagttgtatgttattgtttcaagagttacatcta 1394113  T
Q  250 gagaaggactaaagacattgat 271  Q
    ||||||||||||| | ||||||    
T  1394114 gagaaggactaaatatattgat 1394135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 8560883 - 8560810
Alignment:
Q  11 gagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtca 84  Q
    |||||| |||||| || |||||||||||| | ||||||||||||||| ||||||| ||| ||||||||||||||    
T  8560883 gagggttatttccagaagtaatgttggtggttaggtttttgtatccatgctatctctattgccttcagatgtca 8560810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 25975726 - 25975630
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacca 194  Q
    |||| |||||||||| ||||  ||| |||| |||||||||||||| || ||||| ||||| || |||||  | ||| |||||||||| |||||||||    
T  25975726 gtttaaacgaagacagtttcagttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctacca 25975630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 3591090 - 3591173
Alignment:
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacca 194  Q
    |||||||| ||  |||| ||||||||||| || || ||||| ||||| || |||||| | |||||||||||||| |||||||||    
T  3591090 caatttccgttatctgtctcatttgcaataactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacca 3591173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 7018316 - 7018383
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaac 196  Q
    |||||||| ||||| ||||||||||||||||| ||||| || ||||| | ||||||||| || |||||    
T  7018316 tcatttgcgatgactatcaacaaaagtcaaggacagtcactcaaacacgatggtgtatacctcccaac 7018383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 8498119 - 8498044
Alignment:
Q  106 gaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    |||||||||||||  |  |||| |||||||  |||||||||||||| ||||||||||| || |||||| |||||||    
T  8498119 gaagacaatttccaatatctgtttcatttgtcatgacaatcaacaagagtcaagggcaatcacttaaaaatgttgg 8498044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 25971286 - 25971161
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacg 197  Q
    |||| ||||||| || ||||  ||| |||| |||||||||||||| || ||||| ||||| || |||||  | ||| |||||||||| ||||||||| |     
T  25971286 gtttaaacgaaggcagtttctgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccatct 25971187  T
Q  198 cctatattttctcacgaacagttgta 223  Q
    ||| | ||||| || ||||| |||||    
T  25971186 cctgttttttcacatgaacaattgta 25971161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 2701973 - 2702240
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||     
T  2701973 aggggagggtcattttcgaaagtaatgttggtgatcagatttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaagtttcgaca 2702072  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgc---ttaaacatgttggtgtatatctaccaacgcctata 203  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||   |||||||||||| ||||||||||||||| ||| ||    
T  2702073 aagacaatttcctttgactgtatcatttgcaatgacaattatcaaaagtcaagggcagtcgcttattaaacatgttgatgtatatctaccaacacctgta 2702172  T
Q  204 ttttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||||| |||||||||||||| || || |||||||||||| |||||||||||||||| ||||||    
T  2702173 ttttctcacggacagttgtatgttgctgtttcaagagttacatctagagaaggactaaagatattgat 2702240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 14604151 - 14604339
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |    
T  14604151 aggggagggtcatttacaaaagtaatgttggtgatcaggtttttgtatccaggctatctatatcgcctttagatgtcaggattccctttaagtttcaatg 14604250  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaa 195  Q
    || |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  14604251 aaaacaatttcctttgactgtatcatttgcaatgacaattaataaaagtcaagggctgtcgcttaaacatgttggtgtatatctaccaa 14604339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 88 - 271
Target Start/End: Complemental strand, 53047408 - 53047225
Alignment:
Q  88 ttccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtata 187  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  53047408 ttccttttaagtttcaacgaagacaatttccttggactgtatcatttgcaacgacaattaacaaaagtcaagagcagtcgcttaaacatgttggtgtata 53047309  T
Q  188 tctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||||   | |||||||||||| |||| ||||||||| || || ||||||||||||||||||||||||||| | ||||||    
T  53047308 tctaccaacaaatgtattttctcacggacagatgtatgttgctgtttcaagagttacatccagagaaggactaaatatattgat 53047225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 17757668 - 17757770
Alignment:
Q  162 cagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaa 261  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||| |    
T  17757668 cagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcacggacagttgtatgttgttgtttcaagagttacatctagagaaggactga 17757767  T
Q  262 aga 264  Q
    |||    
T  17757768 aga 17757770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 19058988 - 19059090
Alignment:
Q  162 cagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaa 261  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||| |    
T  19058988 cagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcacggacagttgtatgttgttgtttcaagagttacatctagagaaggactga 19059087  T
Q  262 aga 264  Q
    |||    
T  19059088 aga 19059090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 21799785 - 21799944
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgc 198  Q
    |||||| ||| ||||||| ||||| |||||| ||||||||||||||||||||| |||| ||| || || ||  || ||||||| |||||||| ||  |||    
T  21799785 tttcaaagaaaacaattttctttggctgtatgatttgcaatgacaatcaacaagagtcgaggacaatcactacaaaatgttggagtatatctcccggcgc 21799884  T
Q  199 c--tatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaagg 256  Q
    |  | | |||||||||| ||| |||||||||| || ||  ||||||||||| ||||||||    
T  21799885 ctgttttttttctcacggacaattgtatgttgctgtttcgagagttacatctagagaagg 21799944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 12813362 - 12813242
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| ||||||||||| || |||||||||||||||| ||| || ||   ||||||||||||||| ||||||||||   ||||||| || | |||||| ||    
T  12813362 ctgtgtcatttgcaattactatcaacaaaagtcaagagcaatcactcggacatgttggtgtatacctaccaacgcaagtattttcacatggacagttata 12813263  T
Q  224 tgttgttgcttaaagagttac 244  Q
    ||| | || || |||||||||    
T  12813262 tgtagctgtttcaagagttac 12813242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 18198600 - 18198694
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||||||||||||| || ||||| |||||||| ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  18198600 tcatttgcaatgactattaacaagagtcaaggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 18198694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 26951029 - 26951093
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  26951029 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 26951093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 29692997 - 29692953
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgac 142  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  29692997 gtttcaacgaagacaatttcctttggttgtctcatttgcaatgac 29692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 29693411 - 29693367
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgac 142  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  29693411 gtttcaacgaagacaatttcctttggttgtctcatttgcaatgac 29693367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 36091643 - 36091579
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  36091643 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 36091579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 36155431 - 36155515
Alignment:
Q  106 gaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatct 190  Q
    |||||||||||||  |  ||||||  ||||||||||| || |||||||||||||| ||||| || || || ||||||||||||||    
T  36155431 gaagacaatttcccatttctgtatgctttgcaatgactattaacaaaagtcaaggtcagtctctcaagcaagttggtgtatatct 36155515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 7549000 - 7548901
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttg 228  Q
    |||||||||||||| ||||| || || ||||| || || |||||| |||||||  ||||||| ||||  || |||||||| |||| |||||| |||||||    
T  7549000 tcatttgcaatgactatcaataagagccaaggacaatctcttaaaaatgttggaatatatcttccaaaacccatattttcacacggacagttatatgttg 7548901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 18256099 - 18256194
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| ||||||| || ||||| ||| |||| |||||||||||||| || ||||| ||||| || |||||  | ||| |||||||||| ||||||||    
T  18256099 gtttaaacgaaggcagtttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctacc 18256194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 29679477 - 29679394
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||| || || || || ||| |||| || |||||| |||||||    
T  29679477 gtttcaacgaagaaaatttcctttggttgtctcatttgcaatgactattaataagagccaatggcaatcacttaaaaatgttgg 29679394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 31487116 - 31487215
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  31487116 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 31487215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 18986460 - 18986426
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggca 163  Q
    |||||||||||||| ||||||||||||||||||||    
T  18986460 tcatttgcaatgacgatcaacaaaagtcaagggca 18986426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 36092018 - 36091956
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatcta 191  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||    
T  36092018 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatcta 36091956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 18201251 - 18201320
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| ||||||||||| || || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  18201251 ctgtctcatttgcaataactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 18201320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 35716201 - 35716270
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  35716201 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 35716270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 49562629 - 49562560
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  49562629 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 49562560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 26701291 - 26701227
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggca 163  Q
    |||||| ||||||||||| |  |  |||| |||||||| |||||||||||||| |||||||||||    
T  26701291 tttcaaagaagacaattttcaatatctgtttcatttgccatgacaatcaacaagagtcaagggca 26701227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 36947371 - 36947307
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  36947371 tcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 36947307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 44703222 - 44703174
Alignment:
Q  132 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttg 180  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| ||||    
T  44703222 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttg 44703174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 71576 - 71312
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||  |||||||     
T  71576 aggggagagtcatttccggaagtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgttaggattgcttttaattttcaact 71477  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  71476 aagactatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttgatgtatatctaccaacacctgtattt 71377  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| ||||||||||||| ||| || |||||| |||||||||||| ||||||||| ||||||    
T  71376 tctcacggacagttgtatgttattgtttcaagagtaacatccagagaaagactaaagatattgat 71312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 29968081 - 29968340
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||     
T  29968081 aggggagggtcatttccggaagtaatgttggtgatcagatttttgtatccaggctatctatatcgccttcagatgtcaggattccctttaagtttcaaca 29968180  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     ||| ||| |||||    
T  29968181 aagacaattttctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatat-----aacacctgtattt 29968275  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| ||| ||||||||||||| || |||||||||||||| |||||||||||| | ||||||    
T  29968276 tctcacggacaattgtatgttgttgtttcaagagttacatccaaagaaggactaaaaatattgat 29968340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 2479609 - 2479345
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||| |||||||||| || |||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  2479609 aggggaaggtcatttccagaagtaatgttggtgatcaggtttttgtatataggctatctatatcgccttcagatgtcaggattccctttaagtttcaacg 2479510  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    |||| |||||||||||  ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  2479509 aagaaaatttcctttggttgtatcatttgcaatgacaattaacaaaagccaagggcagtcgcctaaacatgttggtgtatatctaccaacacctgtattt 2479410  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||||| |||||||||||||  || || ||||||||||||||||||| ||||||||| ||||||    
T  2479409 tctcacgcacagttgtatgttactgtttcaagagttacatccagagaatgactaaagatattgat 2479345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 41851445 - 41851187
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  41851445 aggggaaggtcatttccggaagtaatgttggtgatcagatttttgtattcaggctatctatatcgccttcagatgtcaagattccctttaagtttcaacg 41851346  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgtt-ggtgtatatctaccaacgcctatatt 205  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||| ||||||||||||||||| ||||||||||||| ||| ||| ||||    
T  41851345 aagacaatttcctttgactgtatcatttgcaatgataattaacaaaagttaggggtagtcgcttaaacatgttgggtgtatatctactaacacctgtatt 41851246  T
Q  206 ttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaaga 264  Q
    |||||||| |||||||||||||| || || |||||||||||| ||||||||||||||||    
T  41851245 ttctcacggacagttgtatgttgatgtttcaagagttacatctagagaaggactaaaga 41851187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 18000850 - 18000596
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||| ||||    
T  18000850 aggggagggtcattttcagaagtaatgttggtgatcaggtttttgtatccaggctatctatatcaccttcagatgtcaggatttcctttaagttttaacg 18000751  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    |||||||||  |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  18000750 aagacaattctctttgactgtatcatttgcaatgacaattaagaaaagtcaagggcattcgcttaaacatgttggtgtatatctaccaacacctgtattt 18000651  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaa 261  Q
    ||| ||| |||||||||| ||| || || ||||||||||||||||||||||||||    
T  18000650 tcttacggacagttgtatattgctgtttcaagagttacatccagagaaggactaa 18000596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 47428256 - 47428088
Alignment:
Q  103 aacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctat 202  Q
    ||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||  |||||||||||||||||||||||||||||||||||| ||| |    
T  47428256 aacgaagacaatttcttttgactgtatcatttgcaatgaccgttaacaaaagtcaaatgcagtcgcttaaacatgttggtgtatatctaccaacacctgt 47428157  T
Q  203 attttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    ||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||| ||| ||||||    
T  47428156 attttttcacggacagttgtatgttgttgtttcaagagttacatccaaagaaggactatagatattgat 47428088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 273
Target Start/End: Original strand, 10466643 - 10466800
Alignment:
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    ||||||| ||||||||| |||||||||| |||||||||| |||||         |||||||||||||||||||| ||||||||||||||| ||| |||||    
T  10466643 aagacaagttcctttgattgtatcattttcaatgacaattaacaa---------gcagtcgcttaaacatgttgttgtatatctaccaacacctgtattt 10466733  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgatga 273  Q
    ||||||| |||||||||||||| || || ||||| || ||||| |||||||||||||| ||||||||    
T  10466734 tctcacggacagttgtatgttgctgtttcaagagctagatccaaagaaggactaaagatattgatga 10466800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 50232253 - 50232099
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc-aacg 197  Q
    |||||| ||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||| || || ||  || ||||||| |||||||| ||   ||    
T  50232253 tttcaaagaaaacaatttcctttggctgtatcatttgcgatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgtgcg 50232154  T
Q  198 cctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagag 252  Q
    ||| | |||||||||| ||| |||||||||| || ||  ||||||||||| ||||    
T  50232153 cctgttttttctcacggacaattgtatgttgctgtttcgagagttacatctagag 50232099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 56476132 - 56475937
Alignment:
Q  61 tatctatatcgccttcagatgtcatgattccctttaggtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagg 160  Q
    ||||| |||| |||||||||||  | ||||| ||||  |||||||||| |||| | || ||  |||| |||||||||||||| || |||||||||||||     
T  56476132 tatctctatctccttcagatgtagtaattccttttaaatttcaacgaaaacaagtaccgttagctgtgtcatttgcaatgactattaacaaaagtcaaga 56476033  T
Q  161 gcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaagg 256  Q
    |||||| ||||| |||||||| |  ||||| ||||||| | | |||||||||  ||| |||||| ||| || ||  ||||||||||| || |||||    
T  56476032 gcagtcacttaagcatgttggagcgtatctcccaacgcatgttttttctcacatacaattgtatattgctgttttgagagttacatctagggaagg 56475937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 4882277 - 4882164
Alignment:
Q  98 gtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacg 197  Q
    |||||||||||  ||||||||  | || || || ||||||||||| || |||||||||||||| || ||  | |||||||||||||||||| | ||| ||    
T  4882277 gtttcaacgaaagcaatttccacttaccgtttcttttgcaatgactataaacaaaagtcaaggtcaatctttgaaacatgttggtgtatatttgccatcg 4882178  T
Q  198 cctatattttctca 211  Q
    ||||| || |||||    
T  4882177 cctatcttctctca 4882164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 23143761 - 23143716
Alignment:
Q  109 gacaatttcctttgactgtatcatttgcaatgacaatcaacaaaag 154  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||    
T  23143761 gacaatttcctttgtctgtatgttttgcaatgacaatcaacaaaag 23143716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 41860088 - 41860024
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  41860088 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 41860024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 52682242 - 52682306
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  52682242 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 52682306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 16908944 - 16909043
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| |||||||| | ||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  16908944 ctgtctcatttgcaatgactattaacaagagtcaaggtcggtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 16909043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 21382529 - 21382628
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  21382529 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 21382628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 54568813 - 54568739
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaa 173  Q
    |||||| |||||| ||||||  |  |||| |||||||| |||||||||||||| ||||||||||| || ||||||    
T  54568813 tttcaaagaagaccatttccaatatctgtttcatttgccatgacaatcaacaagagtcaagggcaatcacttaaa 54568739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 5454118 - 5454167
Alignment:
Q  132 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| |||||    
T  5454118 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgg 5454167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 30388250 - 30388181
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  30388250 ctgtctcatttgcaatgactattaacaagagtcatggtcagtcgctagaacatgttggtgtctacctacc 30388181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 9039306 - 9039394
Alignment:
Q  123 actgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctca 211  Q
    ||||| || ||||||||||| || |||||||| ||||| || ||  | |||||||||||||||||| | ||| ||||||| || |||||    
T  9039306 actgtttcttttgcaatgactataaacaaaagccaaggtcaatctttgaaacatgttggtgtatatttgccatcgcctatcttctctca 9039394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 20640378 - 20640124
Alignment:
Q  7 aggggagggtcatttccggatgtaatgttggtgatcaggtttttgtatccaggctatctatatcgccttcagatgtcatgattccctttaggtttcaacg 106  Q
    ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||| ||||    
T  20640378 aggggagggtcattttcagaagtaatgttggtgatcaggtttttgtatccaggctatctatatcaccttcagatgtcaggatttcctttaagttttaacg 20640279  T
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattt 206  Q
    |||||||||  |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  20640278 aagacaattctctttgactgtatcatttgcaatgacaattaagaaaagtcaagggcattcgcttaaacatgttggtgtatatctaccaacacctgtattt 20640179  T
Q  207 tctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaa 261  Q
    ||| ||| |||||||||| ||| || || ||||||||||||||||||||||||||    
T  20640178 tcttacggacagttgtatattgctgtttcaagagttacatccagagaaggactaa 20640124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 13907771 - 13907835
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || |||||| | |||||||||||||| ||||||||    
T  13907771 tcatttgcaatgactattaacaagagtcagggtcagtcgttgaaacatgttggtgtttatctacc 13907835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 27534482 - 27534551
Alignment:
Q  106 gaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaaca 175  Q
    ||||||||||||| |||  ||| || ||||||||||| || ||||||||| |||| ||||| ||||||||    
T  27534482 gaagacaatttccattggttgtttcttttgcaatgactattaacaaaagttaaggccagtctcttaaaca 27534551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 35432395 - 35432326
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||    
T  35432395 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctacc 35432326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 9361854 - 9361906
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 181  Q
    |||||||| |||||||||||||| ||||| ||||| || |||||| |||||||    
T  9361854 tcatttgccatgacaatcaacaagagtcaggggcaatcacttaaaaatgttgg 9361906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 26455416 - 26455480
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || | |||| | |||||||||||||| ||||||||    
T  26455416 tcatttgcaatgactattaacaagagtcagggtcggtcgttgaaacatgttggtgtttatctacc 26455480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 26455791 - 26455855
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||||| || | |||| | |||||||||||||| ||||||||    
T  26455791 tcatttgcaatgactattaacaagagtcagggtcggtcgttgaaacatgttggtgtttatctacc 26455855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 40605253 - 40605317
Alignment:
Q  129 tcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctacc 193  Q
    |||||||||||||| || ||||| ||| | || |||||| | |||||||||||||| ||||||||    
T  40605253 tcatttgcaatgactattaacaagagttagggtcagtcgttgaaacatgttggtgtttatctacc 40605317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 271
Target Start/End: Complemental strand, 959 - 794
Alignment:
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtc-gcttaaacatgttggtgtatatctaccaacgcctatatt 205  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||  || ||||    
T  959 aagacaatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggcagtccgcttaaacatgttggtgtatatctaccaacatctgtatt 860  T
Q  206 ttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||| ||| |||||||||| || || ||||||||||||| ||||| ||||||||| ||||||    
T  859 ttctcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgat 794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 271
Target Start/End: Original strand, 9258 - 9423
Alignment:
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtc-gcttaaacatgttggtgtatatctaccaacgcctatatt 205  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||  || ||||    
T  9258 aagacaatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggcagtccgcttaaacatgttggtgtatatctaccaacatctgtatt 9357  T
Q  206 ttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||| ||| |||||||||| || || ||||||||||||| ||||| ||||||||| ||||||    
T  9358 ttctcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgat 9423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 271
Target Start/End: Complemental strand, 29722 - 29557
Alignment:
Q  107 aagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtc-gcttaaacatgttggtgtatatctaccaacgcctatatt 205  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||  || ||||    
T  29722 aagacaatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggcagtccgcttaaacatgttggtgtatatctaccaacatctgtatt 29623  T
Q  206 ttctcacgaacagttgtatgttgttgcttaaagagttacatccagagaaggactaaagacattgat 271  Q
    |||||||| ||| |||||||||| || || ||||||||||||| ||||| ||||||||| ||||||    
T  29622 ttctcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgat 29557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0296 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 1026 - 974
Alignment:
Q  111 caatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggca 163  Q
    ||||||||||||||||| |||||||||||||| || || ||||||||||||||    
T  1026 caatttcctttgactgtttcatttgcaatgactattaataaaagtcaagggca 974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 52137 - 52038
Alignment:
Q  124 ctgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacgcctatattttctcacgaacagttgta 223  Q
    |||| |||||||||||||| || ||||| ||||| || ||||||||  ||||||||||||| || |||||  | ||||| ||||| || | |||||||||    
T  52137 ctgtctcatttgcaatgactattaacaagagtcagggtcagtcgctagaacatgttggtgtctacctaccgtctcctattttttcacatggacagttgta 52038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 43111 - 43202
Alignment:
Q  99 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatct 190  Q
    ||||||||| ||||||||||| |  | || || ||||| ||||| || ||||||||||| ||||| || ||||| ||||||||||| |||||    
T  43111 tttcaacgacgacaatttcctcttgcagtttcttttgctatgactattaacaaaagtcaggggcaatctcttaatcatgttggtgtttatct 43202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 79425 - 79377
Alignment:
Q  132 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttg 180  Q
    ||||||||||| || |||||||||||||||||||| || ||||| ||||    
T  79425 tttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttg 79377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1519 times since January 2019
Visitors: 4421