View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0719_high_24 (Length: 248)

Name: NF0719_high_24
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0719_high_24
NF0719_high_24
[»] chr2 (21 HSPs)
chr2 (159-232)||(5395430-5395503)
chr2 (159-248)||(974474-974562)
chr2 (159-248)||(20034127-20034215)
chr2 (159-240)||(25539045-25539126)
chr2 (159-243)||(31023450-31023534)
chr2 (159-240)||(16766934-16767014)
chr2 (173-248)||(34578039-34578113)
chr2 (159-245)||(41002161-41002246)
chr2 (159-240)||(1690628-1690708)
chr2 (159-248)||(7301923-7302011)
chr2 (175-240)||(13502573-13502638)
chr2 (159-248)||(27524001-27524089)
chr2 (159-240)||(34841729-34841810)
chr2 (159-243)||(27406939-27407023)
chr2 (159-246)||(21869228-21869314)
chr2 (159-240)||(19492080-19492162)
chr2 (159-240)||(26251663-26251745)
chr2 (159-243)||(35565854-35565934)
chr2 (159-212)||(8428370-8428423)
chr2 (167-240)||(19519530-19519603)
chr2 (219-248)||(30433088-30433117)
[»] chr4 (16 HSPs)
chr4 (159-240)||(24719723-24719804)
chr4 (162-241)||(18403680-18403758)
chr4 (167-240)||(8011036-8011109)
chr4 (159-240)||(4157001-4157081)
chr4 (167-240)||(6346855-6346928)
chr4 (159-232)||(7044911-7044984)
chr4 (159-239)||(9149624-9149704)
chr4 (159-213)||(7045090-7045144)
chr4 (159-245)||(55476124-55476209)
chr4 (163-212)||(8020729-8020778)
chr4 (159-241)||(8409730-8409811)
chr4 (159-208)||(5846050-5846099)
chr4 (168-213)||(10394768-10394813)
chr4 (159-209)||(8743708-8743758)
chr4 (159-240)||(17466228-17466308)
chr4 (159-243)||(5884190-5884274)
[»] chr7 (12 HSPs)
chr7 (159-248)||(25842636-25842724)
chr7 (162-246)||(8254013-8254096)
chr7 (159-248)||(23618334-23618422)
chr7 (159-240)||(26565448-26565528)
chr7 (159-248)||(1981228-1981316)
chr7 (159-240)||(7307147-7307226)
chr7 (159-240)||(17809027-17809108)
chr7 (173-240)||(4574879-4574946)
chr7 (169-240)||(30294404-30294475)
chr7 (159-245)||(8304220-8304307)
chr7 (159-240)||(44944745-44944825)
chr7 (159-243)||(4247505-4247588)
[»] chr6 (12 HSPs)
chr6 (162-243)||(33593060-33593141)
chr6 (159-247)||(27890522-27890609)
chr6 (159-215)||(5422584-5422640)
chr6 (159-212)||(31407444-31407497)
chr6 (159-211)||(20400015-20400067)
chr6 (169-240)||(4841729-4841800)
chr6 (165-240)||(18490539-18490614)
chr6 (194-240)||(3573800-3573846)
chr6 (159-212)||(7621907-7621960)
chr6 (159-240)||(20432506-20432586)
chr6 (159-240)||(23897960-23898040)
chr6 (159-207)||(645422-645470)
[»] chr3 (11 HSPs)
chr3 (159-248)||(19348689-19348777)
chr3 (172-240)||(28135923-28135991)
chr3 (159-240)||(8592312-8592392)
chr3 (159-212)||(9169809-9169862)
chr3 (159-240)||(27676584-27676665)
chr3 (159-243)||(6861036-6861120)
chr3 (159-246)||(22970945-22971031)
chr3 (159-243)||(42696996-42697080)
chr3 (167-212)||(10591789-10591834)
chr3 (171-212)||(15806311-15806352)
chr3 (159-240)||(39428051-39428132)
[»] chr8 (10 HSPs)
chr8 (166-240)||(15761258-15761332)
chr8 (159-239)||(1018082-1018162)
chr8 (159-248)||(40541725-40541814)
chr8 (159-208)||(16752159-16752208)
chr8 (159-239)||(3094143-3094223)
chr8 (159-234)||(45403178-45403253)
chr8 (171-232)||(8582203-8582264)
chr8 (159-240)||(11879749-11879829)
chr8 (159-240)||(11897165-11897245)
chr8 (192-240)||(24056470-24056518)
[»] scaffold0603 (1 HSPs)
scaffold0603 (159-240)||(8859-8940)
[»] chr1 (5 HSPs)
chr1 (159-248)||(12002764-12002852)
chr1 (159-240)||(17197441-17197521)
chr1 (159-237)||(18891497-18891575)
chr1 (159-240)||(9954933-9955015)
chr1 (161-240)||(17055819-17055896)
[»] scaffold0182 (1 HSPs)
scaffold0182 (167-246)||(24530-24608)
[»] chr5 (11 HSPs)
chr5 (162-245)||(15051999-15052081)
chr5 (159-215)||(26021469-26021525)
chr5 (159-212)||(187812-187865)
chr5 (159-208)||(19377749-19377798)
chr5 (159-240)||(43005759-43005840)
chr5 (159-239)||(24648165-24648245)
chr5 (159-212)||(41427555-41427608)
chr5 (164-232)||(9996891-9996959)
chr5 (159-240)||(19579091-19579172)
chr5 (219-248)||(19579216-19579245)
chr5 (159-240)||(23172328-23172408)
[»] scaffold0027 (1 HSPs)
scaffold0027 (159-248)||(133020-133108)
[»] scaffold0017 (1 HSPs)
scaffold0017 (158-208)||(38475-38525)
[»] scaffold1178 (1 HSPs)
scaffold1178 (159-240)||(471-551)
[»] scaffold0061 (1 HSPs)
scaffold0061 (159-208)||(76257-76306)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 5395503 - 5395430
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||||||    
T  5395503 tttatgactatatacaatttataacatattttgaacattatttttgttttggtaaaatctttcgattttgattg 5395430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 974474 - 974562
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||    
T  974474 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtccc 974562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 20034215 - 20034127
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||| ||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||    
T  20034215 tttatgagtatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtccc 20034127  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 25539126 - 25539045
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||||| |||||||||| || | |||||||| |||||||||||||  | |||||||||||||| ||||||    
T  25539126 tttatgactatatacaatatataacatatatttagcattatttctgttttggtaaaatctatcgattttgattgcaatttta 25539045  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 31023450 - 31023534
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||| |||||||||||    |||||||||||| |||||||||||    
T  31023450 tttatgactatttactatttataacatatatttaacattatttttattttggtaaaatccatcgattttgattacgattttatga 31023534  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 16766934 - 16767014
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||| |||||||||||||||| || || | |||||||||||||||||||||   ||| |||||||||||||||||||    
T  16766934 tttatgactgtatacaatttataacaaatatttagcattatttttgttttggtaaatccttt-gattttgattgcgatttta 16767014  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 34578039 - 34578113
Alignment:
Q  173 caatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||    
T  34578039 caatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtccc 34578113  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 41002161 - 41002246
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagt 245  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||||||||| | ||   |||||||||||| |||||||| ||||    
T  41002161 tttatgactatatgcaatttataacatatatttagcattatttttgttttggt-agaatcctcgattttgattacgattttacgagt 41002246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 1690708 - 1690628
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| |||||||| |||| || || |||||| || |||||||||||  | |||||||||||||||||||||    
T  1690708 tttatgactatataccatttataaaatatatttaatattattatt-ttttggtaaaatttatcgattttgattgcgatttta 1690628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 7301923 - 7302011
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    |||||||| |||| ||||||||||||||| || |||||||||||| ||||||| | ||   ||||||||||||||||||||  |||||||    
T  7301923 tttatgaccatatgcaatttataacatatatttaacattatttttattttggt-agaatcctcgattttgattgcgattttgcgagtccc 7302011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 13502638 - 13502573
Alignment:
Q  175 atttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| || || |||||||||||||||||||||    |||||||||||||||||||||    
T  13502638 atttataacatatatttaatattatttttgttttggtaaaatccatcgattttgattgcgatttta 13502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 27524089 - 27524001
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||| ||||| |||||||||| |||| || |||||||||||||||||||| | ||   |||||||||||||| |||||| |||||||    
T  27524089 tttatgaatatatgcaatttataatatatatttaacattatttttgttttggt-agaaccctcgattttgattgcaattttacgagtccc 27524001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 34841729 - 34841810
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||||| | || ||    |||||||||||||||||||||    
T  34841729 tttatgactatatacaatttataacatatatttattattatttttgtttggatagaatccatcgattttgattgcgatttta 34841810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 27406939 - 27407023
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||| |||||||||| ||||||| |||| || | |||||||||||||||||| |||    || |||||||||||||||||||||    
T  27406939 tttattactatatacagtttataatatatatttagcattatttttgttttggtgaaatccatcaattttgattgcgattttatga 27407023  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 21869314 - 21869228
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtc 246  Q
    ||||||||||||| ||||||||||||||| || | ||| |||||||||||||| | ||   ||||||||||||| ||||||| |||||    
T  21869314 tttatgactatatgcaatttataacatatatttagcataatttttgttttggt-agaatcatcgattttgattgggattttacgagtc 21869228  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 19492080 - 19492162
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatt-tttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||    |||||||||||| || |||||    
T  19492080 tttatgactatatacaatttataacatatatttagcattattattttttttggtaaaatccatcgattttgattacggtttta 19492162  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 26251663 - 26251745
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttg-ttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||| |||||||| ||  |  ||||||||||||| ||||||    
T  26251663 tttatgactatatgcaatttataacatatatttaccattatttttgattttggtagaatctaccgattttgattgcaatttta 26251745  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 35565934 - 35565854
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||||||||||||||||||||| ||    | ||||||| |||||||||||    ||||||||||||| ||||||||||    
T  35565934 tttatgactatatacaatttataacatatatt---tagtattttt-ttttggtaaaatccatcgattttgattgtgattttatga 35565854  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 8428370 - 8428423
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    |||||||||||||| ||||||||| ||||  | | |||||||||||||||||||    
T  8428370 tttatgactatatataatttataatatatagttagcattatttttgttttggta 8428423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 19519530 - 19519603
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||| ||||||||||||||| || | ||||||||| ||||| ||| ||  | || ||||||||||||||||||    
T  19519530 tatatgcaatttataacatatatttagcattattttggtttttgtagaatctatcaattttgattgcgatttta 19519603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 30433088 - 30433117
Alignment:
Q  219 ttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||||||||||||||||||||    
T  30433088 ttcgattttgattgcgattttatgagtccc 30433117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 24719723 - 24719804
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||    |||||||||||||||||||||    
T  24719723 tttatgactatatacaatttataacatatatttaacattatttttgctttggtaaaactcatcgattttgattgcgatttta 24719804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 18403680 - 18403758
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttat 241  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| | ||  |||||||||||||||||||||||    
T  18403680 atgactatatacaatttataacatatatttaacattatttttgttttggt-agaatcttcgattttgattgcgattttat 18403758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 8011109 - 8011036
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||| |  |||||||||||||||||||||    
T  8011109 tatatacaatttataacatatatttagcattatttttgttttggtaaaatacatcgattttgattgcgatttta 8011036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 4157001 - 4157081
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||    |||||||||||||||||||||    
T  4157001 tttatcactatatacaatt-ataacatatattcaacattatttttgttttagtaaaatccatcgattttgattgcgatttta 4157081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 6346928 - 6346855
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||| || | |||||||||||||||||| |||    |||||||||||||||||||||    
T  6346928 tatatacaatttataacatatatttatcattatttttgttttggtgaaatccatcgattttgattgcgatttta 6346855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 7044911 - 7044984
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||    |||||||||||||    
T  7044911 tttatcactatatacaaattataacacatgtttaacattatttttgttttggtaaaatccatcgattttgattg 7044984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 9149704 - 9149624
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    ||||| ||||||||||||||||||||||| || | |||||||||| |||||||||||  | || |||||||||||| ||||    
T  9149704 tttataactatatacaatttataacatatatttagcattatttttcttttggtaaaatctatcaattttgattgcgttttt 9149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 7045090 - 7045144
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaa 213  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  7045090 tttatcactatatacaaattataacatatatttaacattatttttgttttggtaa 7045144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 55476124 - 55476209
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagt 245  Q
    ||||||||||||| ||||||||||||||| ||   |||||||||||||||||| | ||   ||||||||||||||||||||| ||||    
T  55476124 tttatgactatatgcaatttataacatatattttgcattatttttgttttggt-agaatcctcgattttgattgcgattttacgagt 55476209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 8020778 - 8020729
Alignment:
Q  163 tgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  8020778 tgactatatgcaatttataacatatatttaacattatttttgttttggta 8020729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 8409730 - 8409811
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttat 241  Q
    |||||||||||||  |||||||||||||| || | |||||||||||||||||| | ||   |||||||||||| |||||||||    
T  8409730 tttatgactatatgtaatttataacatatatttagcattatttttgttttggt-agaatcctcgattttgattacgattttat 8409811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 5846099 - 5846050
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    |||||||| |||||||||||||||||||| || | |||||||||||||||    
T  5846099 tttatgacaatatacaatttataacatatatttagcattatttttgtttt 5846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 10394768 - 10394813
Alignment:
Q  168 atatacaatttataacatatgttcaacattatttttgttttggtaa 213  Q
    |||||||||||||||||||| || | ||||||||||||||||||||    
T  10394768 atatacaatttataacatatatttaccattatttttgttttggtaa 10394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 8743758 - 8743708
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttg 209  Q
    |||||||||||  |||||||| ||||||| || ||||||||||||||||||    
T  8743758 tttatgactatgaacaatttaaaacatatatttaacattatttttgttttg 8743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 17466228 - 17466308
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || || ||||||||| || | ||||||    |||||||||||||| ||||||    
T  17466228 tttatgactatataccatttataacatatatttaatattattttt-ttgttgtaaaatccatcgattttgattgcaatttta 17466308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 5884274 - 5884190
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    |||||||| |||| ||||||||||||||  || | ||||| ||||||||| ||||||    || |||||||||| ||||||||||    
T  5884274 tttatgacaatatgcaatttataacatacttttagcattacttttgtttttgtaaaatccatctattttgattgtgattttatga 5884190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 25842724 - 25842636
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||    
T  25842724 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtccc 25842636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 8254096 - 8254013
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtc 246  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||    
T  8254096 atgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagtc 8254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 23618422 - 23618334
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| |||||||||| |||| || |||||||||||||||||||| | ||   |||||||||||| |||||||| |||||||    
T  23618422 tttatgactatatgcaatttataatatatatttaacattatttttgttttggt-agaatcctcgattttgattacgattttacgagtccc 23618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 26565528 - 26565448
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    || ||||||||||| ||||||    
T  26565528 tttatgactatatacagtttataacatatatt-aacattatttttgttttggtaaaatccatcaattttgattgcaatttta 26565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 1981316 - 1981228
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||||||| | | ||   |||||||||||||| |||||| |||||||    
T  1981316 tttatgactatatgcaatttataacatatatttagcattatttttgttttgat-agaatcctcgattttgattgcaattttacgagtccc 1981228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 7307147 - 7307226
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||| |||||||| ||||||||| ||||| || |||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  7307147 tttacgactatatgcaatttata-catatatttaacattatttttgttttggt-agaatcttcgattttgattgcgatttta 7307226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 17809108 - 17809027
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||| ||||| ||||||||||||||| || | ||||||||||||||||||| ||  | |  ||||||||||||||||||    
T  17809108 tttatgattatatgcaatttataacatatatttagcattatttttgttttggtagaatctatgaattttgattgcgatttta 17809027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 4574879 - 4574946
Alignment:
Q  173 caatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| || | |||||||||| |||||||||||  | |||||||||| ||||||||||    
T  4574879 caatttataacatatattaagcattatttttattttggtaaaatctatcgattttgactgcgatttta 4574946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 30294404 - 30294475
Alignment:
Q  169 tatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||    |||| |||||||| |||||||    
T  30294404 tatacaatttataacatatatttaacattatctttgttttggtaaaatccatcgagtttgattgtgatttta 30294475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 8304220 - 8304307
Alignment:
Q  159 tttatgactatatacaatttataac--atatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagt 245  Q
    ||||||||||||| |||||||||||  |||| || || ||||||||||||||||| | ||   |||||||||||||| |||||||||||    
T  8304220 tttatgactatatgcaatttataacatatatttttaaaattatttttgttttggt-agaatcctcgattttgattgcaattttatgagt 8304307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 44944825 - 44944745
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  |||||| || ||||||||||   | |||||||||||||||||||||    
T  44944825 tttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtctatcgattttgattgcgatttta 44944745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 4247505 - 4247588
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||||||  |||| |||||||| || |  ||||||||| ||| |||||||    ||||||||||||||||||||||||    
T  4247505 tttatgactatatatcatttgtaacatatatttagtattattttt-tttaggtaaaatccatcgattttgattgcgattttatga 4247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 33593141 - 33593060
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||||||| ||    ||||||||||||||||||||||||    
T  33593141 atgactatatgcaatttataacatatgtttaacattatttttcttttggtagaatccatcgattttgattgcgattttatga 33593060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 27890522 - 27890609
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtcc 247  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||||||||| | || | ||||||||||||||||||||| ||||||    
T  27890522 tttatgactatatgcaatttataacatatatttagcattatttttgttttggt-agaattctcgattttgattgcgattttacgagtcc 27890609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 5422640 - 5422584
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaa 215  Q
    |||||||||||||| |||||||||||||| || | ||||||||||||||||||||||    
T  5422640 tttatgactatatataatttataacatatatttagcattatttttgttttggtaaaa 5422584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 31407444 - 31407497
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    |||||||| |||| ||||||||||||||| || |||||||||||||||||||||    
T  31407444 tttatgacaatatgcaatttataacatatatttaacattatttttgttttggta 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 20400067 - 20400015
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggt 211  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||||||||    
T  20400067 tttatgactatatgcaatttataacatatatttatcattatttttgttttggt 20400015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 4841800 - 4841729
Alignment:
Q  169 tatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||| ||   |||  ||||||||||||||||| |  |||||||||||||||||||||    
T  4841800 tatacaatttataacatatattttgcatattttttgttttggtaaaatacatcgattttgattgcgatttta 4841729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 18490614 - 18490539
Alignment:
Q  165 actatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||| ||||||||||||| || | ||||||||||| ||||||| ||    || ||||||||||||||||||    
T  18490614 actatatacgatttataacatatatttatcattatttttgatttggtagaatccatcaattttgattgcgatttta 18490539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 3573846 - 3573800
Alignment:
Q  194 cattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||||||    |||||||||||||||||||||    
T  3573846 cattatttttgttttggtaaaactcatcgattttgattgcgatttta 3573800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 7621960 - 7621907
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||||||  |||||||||| |||| || | |||||||||||||||||||    
T  7621960 tttatgactataggcaatttataatatatatttatcattatttttgttttggta 7621907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 20432586 - 20432506
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||||||||| || |  |||||||||||||||||  ||    |||||||||||||||| ||||    
T  20432586 tttatgactatatgcaatttataacatatatt-agtattatttttgttttggtggaatccatcgattttgattgcgaattta 20432506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 23897960 - 23898040
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  ||| ||||| |||||||||||    ||||||||||||| |||||||    
T  23897960 tttatgactatataccatttataacatatatttagtatt-ttttttttttggtaaaatccatcgattttgattgagatttta 23898040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 645422 - 645470
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttt 207  Q
    ||||||||||||| ||||||||||||||| || | ||||||| ||||||    
T  645422 tttatgactatatgcaatttataacatatatttagcattattattgttt 645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 19348689 - 19348777
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| |||||||    
T  19348689 tttatgactatatgcaatttataacatatatttaacattatttttgttttggt-ataatcctcgattttgattgcgattttacgagtccc 19348777  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 28135923 - 28135991
Alignment:
Q  172 acaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || | |||||||||| | ||||||    
T  28135923 acaatttataacatatgtttaacattatttttgttttggtaaaatatattgattttgattcctatttta 28135991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 8592392 - 8592312
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||||||||| ||   || |||||||||||||||||||    
T  8592392 tttatgactatatgcaatttataacatatatttatcattatttttgttttggtagaatcctt-gattttgattgcgatttta 8592312  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 9169809 - 9169862
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  9169809 tttatgactatatgcaatttataacatatatttaacattatttttgttttggta 9169862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 27676584 - 27676665
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||| |||||||||||||| || |||||| |||||||||||||||||    | ||||||||||| |||||||    
T  27676584 tttatgactatatataatttataacatatatttaacattgtttttgttttggtaaaatccattgattttgattgtgatttta 27676665  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 6861120 - 6861036
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    |||||||||||| ||||||||||||||||  | | | ||||||||||||||||| ||    ||||||||||||||||||||||||    
T  6861120 tttatgactatagacaatttataacatatagttagctttatttttgttttggtagaatccatcgattttgattgcgattttatga 6861036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 22970945 - 22971031
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtc 246  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||||||||| | ||   |||||||||||||| |||||| |||||    
T  22970945 tttatgactatatgcaatttataacatatatataacattatttttgttttggt-agaatcctcgattttgattgcaattttacgagtc 22971031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 42696996 - 42697080
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatga 243  Q
    ||||||||||||||| ||||||||||||| ||    ||| ||||| |||||||||||    |||||||||||||||| |||||||    
T  42696996 tttatgactatataccatttataacatatatttggtatttttttttttttggtaaaatccatcgattttgattgcgagtttatga 42697080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 10591789 - 10591834
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||| ||||||||||||||| || | |||||||||||||||||||    
T  10591789 tatatgcaatttataacatatatttagcattatttttgttttggta 10591834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 15806352 - 15806311
Alignment:
Q  171 tacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  15806352 tacaatttataacatatatttagcattatttttgttttggta 15806311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 39428051 - 39428132
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| | ||||||||||| || |  |||| |||| ||| |||||||    |||||||||||||||||||||    
T  39428051 tttatgactatatactacttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgcgatttta 39428132  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 15761332 - 15761258
Alignment:
Q  166 ctatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||    |||||||||||||||||||||    
T  15761332 ctatatacaatttataacatatatttagcattatttttgttttggtaaaatccatcgattttgattgcgatttta 15761258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 1018162 - 1018082
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    |||||||||||||| |||||||||||||  || |||||||||||| |||||||| ||  | ||||||||||||||| ||||    
T  1018162 tttatgactatatataatttataacatacatttaacattatttttattttggtagaatctatcgattttgattgcgctttt 1018082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 40541814 - 40541725
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattat-ttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || |||||||| ||||||||||||  ||   || ||||||||||||||||||| |||||||    
T  40541814 tttatgactatatgcaatttataacatatatttaacattattttttgttttggttgaatcctt-gattttgattgcgattttacgagtccc 40541725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 16752159 - 16752208
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  16752159 tttatgactatatgcaatttataacatatatttaacattatttttgtttt 16752208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 3094223 - 3094143
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    ||||||||||||||| ||||||||||||| || |  ||| ||||| |||| ||||||  | || |||||||||||||||||    
T  3094223 tttatgactatataccatttataacatatatttagtattttttttttttttgtaaaatctatcaattttgattgcgatttt 3094143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 45403178 - 45403253
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcg 234  Q
    |||||||  |||||| ||||||||||||| || || |||||| || |||||||||||  | |||||||||||||||    
T  45403178 tttatgataatataccatttataacatatatttaatattattatttttttggtaaaatctatcgattttgattgcg 45403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 8582203 - 8582264
Alignment:
Q  171 tacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    |||||| |||||||||| || |||||||||| |||||||||||||    |||||||||||||    
T  8582203 tacaatgtataacatatatttaacattatttatgttttggtaaaattcatcgattttgattg 8582264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 11879749 - 11879829
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  |||||| || |||||||||||    |||||||||| ||||||||||    
T  11879749 tttatgactatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgatttta 11879829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 11897165 - 11897245
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| || |  |||||| || |||||||||||    |||||||||| ||||||||||    
T  11897165 tttatgactatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgatttta 11897245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 24056518 - 24056470
Alignment:
Q  192 aacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||||||||| |||||  | |||||| ||||||||||||||    
T  24056518 aacattatttttgttttgataaaatctatcgattatgattgcgatttta 24056470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 8940 - 8859
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||||| ||||||||||| || | |||||| |||||||||||||||    |||||||||||||||||||||    
T  8940 tttatgactatatacaacttataacatatatttagcattatctttgttttggtaaaatccatcgattttgattgcgatttta 8859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 12002852 - 12002764
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||||||||| ||   || ||||||||||||||||||| |||||||    
T  12002852 tttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatcctt-gattttgattgcgattttacgagtccc 12002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 17197521 - 17197441
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| |||||| |||||||| || |||||||||||||||||||| | ||   |||||||||||||||||||||    
T  17197521 tttatgactatatgcaatttgtaacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgatttta 17197441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 18891575 - 18891497
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatt 237  Q
    ||||||||||| || ||||||||| |||| || ||||||||||| ||||||||||||    || |||||||||||||||    
T  18891575 tttatgactatctataatttataatatatatttaacattattttcgttttggtaaaattcatcaattttgattgcgatt 18891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 9955015 - 9954933
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttg-gtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| ||||||||||||| ||||  |||||| || ||||| ||||||    ||||| |||||||||||||||    
T  9955015 tttatgactatataccatttataacatatattcagtattattatttttttgtgtaaaatccatcgatcttgattgcgatttta 9954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 17055896 - 17055819
Alignment:
Q  161 tatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    |||||||||||| |||||||| ||||| |  | ||||||||||||||||||||||    || ||||||||||| ||||||    
T  17055896 tatgactatatataatttatagcatattt--agcattatttttgttttggtaaaatccatccattttgattgcaatttta 17055819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 24530 - 24608
Alignment:
Q  167 tatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtc 246  Q
    ||||| ||||||||||||||| || |||||||||||| ||||||| | ||  ||||||||||||||||||||||||||||    
T  24530 tatatgcaatttataacatatatttaacattattttttttttggt-agaatcttcgattttgattgcgattttatgagtc 24608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 15052081 - 15051999
Alignment:
Q  162 atgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagt 245  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||    
T  15052081 atgactatatgcaatttataacatatatttaacattatttttgttttggt-agaatcctcgattttgattgcgattttacgagt 15051999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 26021469 - 26021525
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaa 215  Q
    ||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||    
T  26021469 tttatgactatatacaatttataacatatatttagcattattattgttttggtaaaa 26021525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 187865 - 187812
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||| ||||||| ||||||||||||||| || |||||||||||||||||||||    
T  187865 tttattactatatgcaatttataacatatatttaacattatttttgttttggta 187812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 19377749 - 19377798
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  19377749 tttatgactatatccaatttataacatatatttaacattatttttgtttt 19377798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 43005840 - 43005759
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||| | ||||||||||||||||||| || | ||||||||||||||||||| ||    |||||||| ||||||||||||    
T  43005840 tttatgagtgtatacaatttataacatatatttagcattatttttgttttggtacaatccatcgattttaattgcgatttta 43005759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 24648165 - 24648245
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttt 239  Q
    |||||||||||||||||||||||| |||| || | |||||||| |||||| ||||||     |||||||||||||||||||    
T  24648165 tttatgactatatacaatttataatatatatttagcattatttatgttttagtaaaatccaccgattttgattgcgatttt 24648245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 41427555 - 41427608
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggta 212  Q
    ||||||||||||| |||||||||| |||| || | |||||||||||||||||||    
T  41427555 tttatgactatatgcaatttataatatatatttatcattatttttgttttggta 41427608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 9996959 - 9996891
Alignment:
Q  164 gactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattg 232  Q
    |||||||  ||||||||||||||| || | ||||||||||||||||||||||    |||||||||||||    
T  9996959 gactataagcaatttataacatatattaagcattatttttgttttggtaaaatccatcgattttgattg 9996891  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 19579091 - 19579172
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||| ||| ||| ||||||||| ||    ||||||||| |||||||||||    |||||||||||||||||||||    
T  19579091 tttatgactatttaccattcataacatatatttggtattattttttttttggtaaaatccatcgattttgattgcgatttta 19579172  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 19579216 - 19579245
Alignment:
Q  219 ttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||||||||||||||||||||    
T  19579216 ttcgattttgattgcgattttatgagtccc 19579245  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 23172408 - 23172328
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||||| |||| |||||||| || || |||| |||| ||| |||||||    |||||||||||||||||||||    
T  23172408 tttatgactatataccatttgtaacatatatttaatattaatttt-tttgggtaaaattcatcgattttgattgcgatttta 23172328  T

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Target: scaffold0027 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 133108 - 133020
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgattttatgagtccc 248  Q
    ||||||||||||| ||||||||||||||| || ||||||| ||||||||| ||| ||   || ||||||||||||||||||| |||||||    
T  133108 tttatgactatatgcaatttataacatatatttaacattaattttgttttagtagaatcctt-gattttgattgcgattttacgagtccc 133020  T

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Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 38525 - 38475
Alignment:
Q  158 ctttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||||    
T  38525 ctttatgactatatacaatttataacatatatttatcattatttttgtttt 38475  T

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Target: scaffold1178 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 471 - 551
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgttttggtaaaaaatttcgattttgattgcgatttta 240  Q
    ||||||||||||| ||||||||| ||||| || | |||||||||||||||||| | ||   |||||||||||||||||||||    
T  471 tttatgactatatgcaatttatatcatatatttagcattatttttgttttggt-agaatcctcgattttgattgcgatttta 551  T

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Target: scaffold0061 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 76306 - 76257
Alignment:
Q  159 tttatgactatatacaatttataacatatgttcaacattatttttgtttt 208  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||    
T  76306 tttatgactatatacaatttataacatatatttatcattatttttgtttt 76257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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