View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0719_high_6 (Length: 414)
Name: NF0719_high_6
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 34 - 403
Target Start/End: Complemental strand, 7353439 - 7353070
Alignment:
| Q |
34 |
tttcataattgataacgcttataatgaattgcatttcatggaataatagattgtggtggattttactgcttcatggtgtggtccatgccgttttattgct |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7353439 |
tttcatagttgataacgcttataatgaattgcatttcattgaataatagattgtggtggattttactgcttcatggtgtggtccatgccgttttattgct |
7353340 |
T |
|
| Q |
134 |
ccaattctagctgagattgctaagaagacacctgaagtcatcttcctcaaggtggatattgatgaagtaaaggtataaccatatcttaatctatattacc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7353339 |
ccaattctagctgagattgctaagaagatacctgaagtcatcttcctcaaggtggatattgatgaagtaaaggtataaccatatcttaatctatattacc |
7353240 |
T |
|
| Q |
234 |
ttattctttctcaagcttaatacatgcttaaaatcacgttgagtttgaagaaatcacaacttcaacgagattttgttgaaactctgaagtgtagcttttg |
333 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7353239 |
ttattctttctcaagtttaatacatgcttaaaatcacgttgagtttgaagaaatcacaacttcaacgagattttgatgaaactctgaagtgtagcttttg |
7353140 |
T |
|
| Q |
334 |
tcaaaatcgcagtaggacatcataattctgccaaactaagataacacaatcaaagtttaccatgttctgt |
403 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
7353139 |
tcaaaatcacagtaggacatcatgattctgccaaactcagataacacaatcaaaatttaccatgttctgt |
7353070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 8135624 - 8135675
Alignment:
| Q |
81 |
agattgtggtggattttactgcttcatggtgtggtccatgccgttttattgc |
132 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
8135624 |
agattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgc |
8135675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 35027529 - 35027567
Alignment:
| Q |
303 |
attttgttgaaactctgaagtgtagcttttgtcaaaatc |
341 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
35027529 |
attttgttgaagctctgaagtgtagcttttatcaaaatc |
35027567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 52667064 - 52666946
Alignment:
| Q |
81 |
agattgtggtggattttactgcttcatggtgtggtccatgccgttttattgctccaattctagctgagattgctaagaagacacctgaagtcatcttcct |
180 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||| || |||||||| ||||| |||||| | || ||||||||||| ||| || | |||| |||||| |
|
|
| T |
52667064 |
agattgtagttgatttcactgcttcttggtgtggcccgtgccgtttcattgccccaattttggcagagattgctaaaaagctgccaaatgtcaccttcct |
52666965 |
T |
|
| Q |
181 |
caaggtggatattgatgaa |
199 |
Q |
| |
|
|||||| ||| |||||||| |
|
|
| T |
52666964 |
caaggttgatgttgatgaa |
52666946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 30007467 - 30007510
Alignment:
| Q |
302 |
gattttgttgaaactctgaagtgtagcttttgtcaaaatcgcag |
345 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
30007467 |
gattttgttgaagctctgaagtgtaacttttgacaaaatcgcag |
30007510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1199 times since January 2019
Visitors: 4407