View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0719_low_1 (Length: 735)

Name: NF0719_low_1
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0719_low_1
NF0719_low_1
[»] chr2 (11 HSPs)
chr2 (20-710)||(21965979-21966669)
chr2 (399-682)||(30190314-30190596)
chr2 (207-272)||(9667609-9667674)
chr2 (231-287)||(354476-354532)
chr2 (212-272)||(11230239-11230299)
chr2 (62-129)||(26245298-26245365)
chr2 (231-342)||(40370264-40370375)
chr2 (62-129)||(45718479-45718546)
chr2 (314-364)||(13534252-13534302)
chr2 (229-270)||(6824867-6824908)
chr2 (229-258)||(16078610-16078639)
[»] chr4 (17 HSPs)
chr4 (20-616)||(15647307-15647903)
chr4 (22-668)||(23156333-23156984)
chr4 (20-705)||(17824933-17825617)
chr4 (193-512)||(25136575-25136894)
chr4 (62-702)||(10347847-10348485)
chr4 (233-372)||(39982720-39982859)
chr4 (74-219)||(36952638-36952783)
chr4 (598-666)||(28048907-28048975)
chr4 (224-272)||(29552404-29552452)
chr4 (229-270)||(8936568-8936609)
chr4 (614-666)||(43496911-43496963)
chr4 (208-272)||(47420277-47420341)
chr4 (229-272)||(19649189-19649232)
chr4 (55-114)||(26695248-26695307)
chr4 (49-95)||(3128775-3128821)
chr4 (199-273)||(19161772-19161846)
chr4 (617-666)||(48638328-48638377)
[»] chr3 (15 HSPs)
chr3 (20-710)||(17151956-17152646)
chr3 (100-710)||(9826862-9827472)
chr3 (22-710)||(3516072-3516760)
chr3 (74-687)||(23823152-23823765)
chr3 (22-692)||(10755451-10756121)
chr3 (20-176)||(9820446-9820602)
chr3 (20-261)||(8596643-8596884)
chr3 (20-285)||(16665364-16665630)
chr3 (20-175)||(30737907-30738062)
chr3 (614-666)||(15426098-15426150)
chr3 (227-259)||(42449687-42449719)
chr3 (55-101)||(21309490-21309536)
chr3 (651-705)||(23820477-23820531)
chr3 (239-272)||(12333691-12333724)
chr3 (229-270)||(14310072-14310113)
[»] chr7 (19 HSPs)
chr7 (22-710)||(12122974-12123662)
chr7 (20-457)||(37073989-37074426)
chr7 (20-435)||(588170-588585)
chr7 (20-696)||(47554675-47555351)
chr7 (20-696)||(22863907-22864583)
chr7 (20-453)||(47550210-47550643)
chr7 (429-708)||(589906-590185)
chr7 (20-423)||(20703926-20704329)
chr7 (20-423)||(20871970-20872373)
chr7 (590-702)||(20696170-20696282)
chr7 (590-702)||(20701648-20701760)
chr7 (22-87)||(24820494-24820559)
chr7 (217-272)||(13441540-13441595)
chr7 (290-385)||(27278672-27278767)
chr7 (596-678)||(17078874-17078956)
chr7 (38-114)||(18768706-18768782)
chr7 (598-669)||(18307157-18307228)
chr7 (229-272)||(45994070-45994113)
chr7 (229-270)||(32850993-32851034)
[»] chr6 (11 HSPs)
chr6 (22-710)||(18293541-18294229)
chr6 (20-710)||(2895589-2896280)
chr6 (20-696)||(5389684-5390353)
chr6 (217-272)||(15675314-15675369)
chr6 (37-114)||(12150240-12150317)
chr6 (598-666)||(16480013-16480081)
chr6 (596-680)||(17256220-17256304)
chr6 (598-666)||(18487309-18487377)
chr6 (617-666)||(12061006-12061055)
chr6 (617-666)||(20618255-20618304)
chr6 (229-270)||(25351717-25351758)
[»] chr5 (12 HSPs)
chr5 (20-696)||(29326584-29327260)
chr5 (20-130)||(6677320-6677430)
chr5 (20-175)||(11267411-11267566)
chr5 (50-702)||(22112312-22112963)
chr5 (233-363)||(41767413-41767543)
chr5 (617-666)||(26371382-26371431)
chr5 (598-666)||(21822829-21822897)
chr5 (229-272)||(25591787-25591830)
chr5 (190-267)||(27525644-27525722)
chr5 (614-680)||(33171537-33171603)
chr5 (619-664)||(27526073-27526118)
chr5 (37-90)||(41767686-41767739)
[»] chr1 (12 HSPs)
chr1 (20-363)||(49371153-49371496)
chr1 (191-539)||(26997517-26997864)
chr1 (62-702)||(48711422-48712061)
chr1 (207-272)||(39431758-39431823)
chr1 (207-272)||(20797132-20797197)
chr1 (217-272)||(32351915-32351970)
chr1 (236-287)||(19203445-19203496)
chr1 (236-287)||(19205855-19205906)
chr1 (191-258)||(52207138-52207205)
chr1 (596-702)||(26997921-26998027)
chr1 (53-147)||(39431604-39431698)
chr1 (229-258)||(7953197-7953226)
[»] chr8 (9 HSPs)
chr8 (20-696)||(10799841-10800516)
chr8 (208-272)||(13878090-13878154)
chr8 (229-272)||(4986668-4986711)
chr8 (217-272)||(16374706-16374761)
chr8 (617-666)||(25586239-25586288)
chr8 (224-272)||(36158642-36158690)
chr8 (47-135)||(36493693-36493781)
chr8 (223-272)||(43247138-43247187)
chr8 (239-272)||(45254443-45254476)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-702)||(222867-223564)
[»] scaffold0032 (2 HSPs)
scaffold0032 (21-342)||(56915-57236)
scaffold0032 (664-710)||(56865-56911)
[»] scaffold0121 (1 HSPs)
scaffold0121 (20-270)||(32926-33176)
[»] scaffold0938 (1 HSPs)
scaffold0938 (430-527)||(3489-3586)
[»] scaffold0062 (2 HSPs)
scaffold0062 (430-527)||(20866-20963)
scaffold0062 (430-527)||(31034-31131)
[»] scaffold0071 (1 HSPs)
scaffold0071 (614-666)||(36088-36140)


Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 710
Target Start/End: Original strand, 21965979 - 21966669
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  21965979 gacatcatcacatcaaggccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagacctctttcaaaatgaaactcatcggtcg 21966078  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  21966079 ggcaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaacaacgccacttagtcggaaaattcattttaatcatcacctcatc 21966178  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21966179 taagtaaccccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 21966278  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21966279 gctatcagaatagcatccaaaatctgtctaccttttatgaaagcagactgagaagcagacaccacacttccaaccaccattctcaaacgattagccaaga 21966378  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || | ||||||||||||||||||||| ||    
T  21966379 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatcagccaccctttgaggactttcaaactttggaatcaaagctatgaacga 21966478  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
    ||||||||| |||||||||| |||||||||||||||||||||||       |||||| |||||||||||||| || |||||||| |||||||||||||||    
T  21966479 agaattaaggcctttcgttaatttaccatgatgataaaactccgcaaaaaagttcaatagatcaatctttaagatttcccaaaagtctttgaagaacccc 21966578  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  21966579 aaattaataccatctggtccgggacatttgaaactatcacaatcccacaccgctgctttaatttcttccaacaagaaaggtttgatgagat 21966669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 682
Target Start/End: Complemental strand, 30190596 - 30190314
Alignment:
Q  399 ttctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctt 498  Q
    ||||||| | ||| ||||| ||||| || | |||||||||||||||||||||||| |  || ||||| ||||| ||||||||||  |||||||  |||||    
T  30190596 ttctcaatctatttgccaacactttggaaagaattttataaacactactcaccaaagaaattggacggaaatcagccacccgttacggactgttgacctt 30190497  T
Q  499 tggaatcaaagctatgaaagaagaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcc 598  Q
    ||| ||||||||||| || | |||||| ||||| || || |  ||||||| | ||||||| || |         |||| |  |||||||| || | ||||    
T  30190496 tgggatcaaagctataaaggtagaattgagacccttagtaagcttaccattacgataaaattcagcaaaaaa-atcaacaagtcaatcttcaacacatcc 30190398  T
Q  599 caaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatt 682  Q
    ||||| || || |||||  |||||||||| ||||||||||||||||||||| | |||||||| ||||| | ||| |||||||||    
T  30190397 caaaaatccttaaagaaatccaaattaatgccatctggtccaggacatttgtagctatcacagtcccatattgcagctttaatt 30190314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 9667674 - 9667609
Alignment:
Q  207 tcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||| |||||||| | ||||| |||||| || ||||| ||||||||||||||||||||||||||||    
T  9667674 tcataacctcatcaaggtaaccccaatcaactgagtcgtaagccttttcaaaatccactttaaaca 9667609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 354532 - 354476
Alignment:
Q  231 aatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttat 287  Q
    |||| |||||||||||||||||||  ||||| |||||||||||||| || |||||||    
T  354532 aatcaaccgagtcataagccttttggaaatcaactttaaacataaggagttctttat 354476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 11230299 - 11230239
Alignment:
Q  212 acctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||||| | ||||| |||||| || ||||| ||||||||||||||||| ||||||||||    
T  11230299 acctcatcaaggtaaccccaatcaacggagtcgtaagccttttcaaaatctactttaaaca 11230239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 26245365 - 26245298
Alignment:
Q  62 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccatt 129  Q
    ||||| || |||||||||||||||||||| ||||| || | ||||||||| || ||||||| ||||||    
T  26245365 aaaggtgatagaggatccccttgacgaaggcctctctctatatgaaactcctcagttggactaccatt 26245298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 40370264 - 40370375
Alignment:
Q  231 aatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaat 330  Q
    |||| ||||||||||| || |||| |||||| ||||| ||||| || ||||| ||||  |||| |||||| ||||| ||  | || || ||||||| |||    
T  40370264 aatcgaccgagtcatatgcttttttaaaatcaactttgaacatgagcagctccttattcttacgcttcgcctcatcaaccgcctcgttggctatcaaaat 40370363  T
Q  331 accatctaaaat 342  Q
    ||||||||||||    
T  40370364 accatctaaaat 40370375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 45718479 - 45718546
Alignment:
Q  62 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccatt 129  Q
    ||||| || |||||||||||||||||||| ||||| || | ||||||||| || ||||||| ||||||    
T  45718479 aaaggtgatagaggatccccttgacgaaggcctctctctatatgaaactcctcagttggactaccatt 45718546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 13534252 - 13534302
Alignment:
Q  314 tcattagctatcagaataccatctaaaatctgtctaccttttataaaagca 364  Q
    ||||| |||||||||||  |||||||||| ||||||||||||| |||||||    
T  13534252 tcattggctatcagaattgcatctaaaatttgtctaccttttacaaaagca 13534302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 6824867 - 6824908
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaa 270  Q
    |||||| |||||||||||||| ||||||||||| ||||||||    
T  6824867 ccaatcaaccgagtcataagctttttcaaaatcaactttaaa 6824908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 16078639 - 16078610
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaa 258  Q
    ||||||||||||||||||||||||||||||    
T  16078639 ccaatccaccgagtcataagccttttcaaa 16078610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 20 - 616
Target Start/End: Complemental strand, 15647903 - 15647307
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15647903 gacatcatcacatcaagaccttcggcagcaaagagaaatagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 15647804  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15647803 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacctcatc 15647704  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15647703 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacactttgcatcatctactacttcatta 15647604  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15647603 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttcccaccaccattctcaaacgattagccaaga 15647504  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15647503 ctttagataaaattttataaacactactcaccaagcctataggacgaaaatctgccaccctttgaggactgtctacctttggaatcaaagctatgaaaga 15647404  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaac 616  Q
    |||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15647403 agaattaagacctttcgttattttcccatgatgataaaactccgcaaaaaagttcaaaagatcaatctttaatatatcccaaaagtctttgaagaac 15647307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 22 - 668
Target Start/End: Complemental strand, 23156984 - 23156333
Alignment:
Q  22 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 121  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||    
T  23156984 catcatcacattaaggccttcaacagctaacagaaacagaaaaggggaaagaggatccccttgacggagttctctttcaaaatgaaactcatcagtcgga 23156885  T
Q  122 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatcta 221  Q
    ||||||||||||| ||| || |||||||| || | ||| ||||||||||||||| ||| |||| ||  ||||||||||||||||  ||||||||||||||    
T  23156884 caaccattcactagcacggaagctgtagccgttgcaacgcactccataatccaagaacgccacatacgcggaaaattcattttacccatcacctcatcta 23156785  T
Q  222 agtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagc 321  Q
    |||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| ||    
T  23156784 agtacccccaatccaccgaatcatacgccttttcaaaatccactttaaacataagtagctctttatcattacgctttgcatcatctaccaattcatttgc 23156685  T
Q  322 tatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaaca-----cttccaaccaccattctcaaacgattagcca 416  Q
    ||||||||| ||||| |||||||||||||| || ||||||||||| |||||||||||||| |||     |||||||||||||||||||| ||||| ||||    
T  23156684 tatcagaatcccatccaaaatctgtctacccttaataaaagcagattgagaagcagacaccacacttcgcttccaaccaccattctcaatcgattggcca 23156585  T
Q  417 agactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaa 516  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || || ||||||||||||||||||| |||    
T  23156584 ggactttagataaaattttataaacactactcaccaaggctataggaagaaaatctgccaccctttgagggctttcaacctttggaatcaaagctacgaa 23156485  T
Q  517 agaagaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaac 616  Q
    |||||||||||| ||||| ||||  ||||||||||  ||||||||||        ||||| | |||||||||||| || |||||||| |||||||||||     
T  23156484 agaagaattaaggcctttagttaacttaccatgatagtaaaactccgcaaaaaaattcaataaatcaatctttaagatttcccaaaagtctttgaagaaa 23156385  T
Q  617 cccaaattaataccatctggtccaggacatttgaaactatcacaatcccaca 668  Q
    |||||||||||| |||||||||| |||||||| || ||||||||||||||||    
T  23156384 cccaaattaatatcatctggtccgggacatttaaagctatcacaatcccaca 23156333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 705
Target Start/End: Complemental strand, 17825617 - 17824933
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||  || |    
T  17825617 gacatcatcacattaagaccttcagcagctaacaaaaacaaaaatggggaaagagggtccccttgacgaaggcctctctcaaaatggaactcatttgtcg 17825518  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||||||||| ||||| || ||||||||||| || |||| |||||||||||||||| | | ||||     || |||||||||||||| ||||||||||||    
T  17825517 gacaaccatttactaatactgatgctgtagccgttgtaatacactccataatccaagagcaccacaggtgcgaaaaattcattttaaccatcacctcatc 17825418  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    |||||| | | ||||||| || |||||  | |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||    
T  17825417 taagtacctcaaatccacggaatcatacactttttcaaaatccactttaaacataagtaactctttattattacacttcgcatcatctaccaattcatta 17825318  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    ||||| ||||| ||||| |||||||||||||   ||||||||||||| |||||||||||||||||| | || |||||| ||||||||||||| || || |    
T  17825317 gctattagaatcccatccaaaatctgtctacgcgttataaaagcagattgagaagcagacacaacattccctaccaccgttctcaaacgattggctaaaa 17825218  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||||||||||| |||| ||||     
T  17825217 cttttgataaaattttataaacactactcaccaaagctataggacgaaaatcagccacccgttgagggctttcgacctttggaatcaaaactataaaagt 17825118  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
     || ||||| ||||| ||||  |||||||| |||||||| ||||        ||||| | ||||||||| || || |||||||| || ||||  || |||    
T  17825117 ggagttaaggcctttagttaacttaccatggtgataaaaatccgcaaaaaa-ttcaataaatcaatcttcaaaatctcccaaaagtccttgagaaaaccc 17825019  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgat 705  Q
    ||||||||||||| ||| || || | ||| ||||||||||| |||||||| ||||||||| ||||||| || ||||| ||||||||    
T  17825018 aaattaataccatatggaccggggcttttaaaactatcacagtcccacaccgctgctttattttcttccaataaaaagggtttgat 17824933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 193 - 512
Target Start/End: Original strand, 25136575 - 25136894
Alignment:
Q  193 aaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcatta 292  Q
    |||||| ||||||| ||||||||||||    |||| |||||| || | ||||||||| || ||||||||||| ||||||||||||| |||||  | |||     
T  25136575 aaaatttattttaaccatcacctcatcatgataaccccaatcgacagtgtcataagctttctcaaaatccaccttaaacataagtaactcttccttattt 25136674  T
Q  293 cacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaa 392  Q
       ||||||||||| ||||  |||||||| |||| ||||||||||| | | |||||||| || ||||||||||||||||||| |||||||||| | ||||    
T  25136675 tttttcgcatcatcaactaactcattagcaatcaaaataccatctagagtttgtctacccttaataaaagcagactgagaagtagacacaacattaccaa 25136774  T
Q  393 ccaccattctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtc 492  Q
    | ||| |||  || | ||||||||| |||||  | | |||||||||||||||||||| ||| |  ||  |||  ||||| ||||| ||||||||| | ||    
T  25136775 caacctttcgtaatctattagccaacactttgaagagaattttataaacactactcatcaaagagattagacagaaatccgccactcgttgaggattctc 25136874  T
Q  493 tacctttggaatcaaagcta 512  Q
     |||||||||||||| ||||    
T  25136875 aacctttggaatcaaggcta 25136894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 62 - 702
Target Start/End: Complemental strand, 10348485 - 10347847
Alignment:
Q  62 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacac 161  Q
    |||||||| ||||| ||||||||||| |  ||||||||||||  ||||||||| || ||||| ||||| || || || || ||||| || || || || |    
T  10348485 aaaggggagagagggtccccttgacgcaagcctctttcaaaacaaaactcatctgtcggacacccatttaccaagactgaagctgttgctgtcgttacgc 10348386  T
Q  162 actccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatc 261  Q
    |||||||||||||   || |||     |||||||||||||||||  |||||| ||||| | ||| |  ||||||||||||||||| ||||| ||||||||    
T  10348385 actccataatccaggcacgccataataacggaaaattcattttagacatcacttcatcaaggtacc--caatccaccgagtcatatgccttctcaaaatc 10348288  T
Q  262 cactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaa 361  Q
     |||||||| | ||| || ||||||| |      || |||||||| || |  ||||| |||||||  || ||||| ||||| || ||||| || || ||     
T  10348287 aactttaaaaagaagaagatctttattagactttttagcatcatcaacaagctcatttgctatcaatatgccatccaaaatttgcctacccttaatgaat 10348188  T
Q  362 gcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctatag 461  Q
    || |||||||  |  || |||||| | || |||||  ||||||| |  |||||||  ||||| || ||||||||||||||||| ||||| |  |  || |    
T  10348187 gccgactgagttgtggaaacaacattaccgaccacatttctcaacctgttagccagcactttggacaaaattttataaacactgctcactagagaaattg 10348088  T
Q  462 gacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaagacctttcgttattttaccatgatgataaaactc 561  Q
    |||| ||||| ||||||||||| ||| | || ||||||||||| |  ||| | ||||  || || |||||||| || |  ||||| ||||| ||||||||    
T  10348087 gacggaaatcagccacccgttgcggattatcaacctttggaattagtgctttaaaagttgagttgagacctttagtaagcttaccgtgatggtaaaactc 10347988  T
Q  562 cgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaa 661  Q
    ||        ||||| | ||||||||| || | ||||||||| ||||| || || ||||||||||||||||| ||||| ||||||||||| ||||||||     
T  10347987 cgcaaaaaaattcaacaaatcaatcttcaacaaatcccaaaaatctttaaaaaatcccaaattaataccatcaggtcccggacatttgaagctatcacag 10347888  T
Q  662 tcccacactgctgctttaatttcttctaacaaaaaaggttt 702  Q
    ||| | | || ||| || |||||||| |||||||| |||||    
T  10347887 tcctagattgatgcctttatttcttccaacaaaaatggttt 10347847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 372
Target Start/End: Complemental strand, 39982859 - 39982720
Alignment:
Q  233 tccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaatac 332  Q
    |||||||||||||| || ||||||||||| ||| | ||||  || || ||||||||  |||   | ||||||||||| ||||||||||||||||| ||||    
T  39982859 tccaccgagtcatatgctttttcaaaatctactctgaacagtagaagttctttatccatacgtcttgcatcatctaccacttcattagctatcaggatac 39982760  T
Q  333 catctaaaatctgtctaccttttataaaagcagactgaga 372  Q
    |||||||||| |   | ||||| |||||||| ||||||||    
T  39982759 catctaaaatttagttccctttaataaaagctgactgaga 39982720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 36952638 - 36952783
Alignment:
Q  74 ggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatcc 173  Q
    |||||||||||||| || ||  |||||| || ||||||||| || || || ||||| |||||||||||||  || || || |||| ||||||||||||||    
T  36952638 ggatccccttgacggagacccttttcaagattaaactcatcagtcgggcacccattaactaacacagatgtcgtcgccgttgtaatacactccataatcc 36952737  T
Q  174 aacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    || | | |||   | ||||||||||||| |||||||| ||||||||    
T  36952738 aagaccgccaaacacacggaaaattcatcttaatcataacctcatc 36952783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 666
Target Start/End: Complemental strand, 28048975 - 28048907
Alignment:
Q  598 ccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||||| ||||| | |||||||| |||||||||||||||||||||||  || ||||||||||| |||||    
T  28048975 ccaaaaatctttaatgaaccccatattaataccatctggtccaggactcttaaaactatcacagtccca 28048907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 29552452 - 29552404
Alignment:
Q  224 taacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  29552452 taaccccaatcaaccgagtcatatgccttttcaaaatccactttaaaca 29552404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 8936568 - 8936609
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaa 270  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  8936568 ccaatcaaccgagtcatatgccttttcaaaatccactttaaa 8936609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 666
Target Start/End: Complemental strand, 43496963 - 43496911
Alignment:
Q  614 aaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    ||||||| ||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  43496963 aaccccatattaacaccatctggtccaggacttttaaaactttcacaatccca 43496911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 47420277 - 47420341
Alignment:
Q  208 catcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||||||||| | ||| | |||||| ||||| ||||| |||||||||||||||||||| ||||    
T  47420277 catcacctcatcaaggtacccccaatcaaccgaatcatacgccttttcaaaatccactttgaaca 47420341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 19649189 - 19649232
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||| | ||||||||| |||||||||||||||||||||||||    
T  19649189 ccaatcaatcgagtcatacgccttttcaaaatccactttaaaca 19649232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 26695248 - 26695307
Alignment:
Q  55 aaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 114  Q
    ||||| ||||||||||||||||||||| ||||| |  ||||| | |||||||||||||||    
T  26695248 aaacaaaaaaggggaaagaggatccccctgacgcaagcctctctgaaaatgaaactcatc 26695307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 3128821 - 3128775
Alignment:
Q  49 taacagaaacagaaaaggggaaagaggatccccttgacgaagtcctc 95  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  3128821 taacaggaacaagaaaggggaaagaggatccccttgacgaagacctc 3128775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 19161846 - 19161772
Alignment:
Q  199 cattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacat 273  Q
    |||||||  ||||||| ||||||| |||| |||||| ||||| || || || || ||||||||||||||||||||    
T  19161846 cattttagccatcaccgcatctaaataaccccaatcaaccgaatcgtacgctttctcaaaatccactttaaacat 19161772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 666
Target Start/End: Complemental strand, 48638377 - 48638328
Alignment:
Q  617 cccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||| ||||| |||||||||| |||||| ||||||||| |||||||||||    
T  48638377 cccatattaacaccatctggttcaggacttttgaaactgtcacaatccca 48638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 710
Target Start/End: Complemental strand, 17152646 - 17151956
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||| ||| |||||||||||||| | |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |    
T  17152646 gacatcatcacattaaggccttcagcagctaatacaaacagaaaaggggaaaggggatccccttgaaggagtcctctttcaaaatgaaactcatcggtcg 17152547  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||    
T  17152546 gacaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaagaacgccacttaggcggaaaattcattttaatcaacacctcatc 17152447  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||     
T  17152446 taagtatccccaatccaccgaatcatacgccttttcaaaatccactttaaacataagtaactctttatcattacgcttcgcatcatctactaattcattt 17152347  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  17152346 gctatcagaataccatccaaaatttgtctaccttttataaaagcagactgagaagcagacaccacacttcctaccaccattctcaattgattagccaaga 17152247  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || || ||||||||||||||||||||||||||    
T  17152246 cttttgataaaattttataaacactactcaccaaggctataggactaaaatctgccaccctttgagggctttcaacctttggaatcaaagctatgaaaga 17152147  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
    ||||||||| ||||| ||||  ||||||||||| ||||||||||        ||||| |  ||||||||||| || |||||||| |||||||||||||||    
T  17152146 agaattaaggcctttagttaacttaccatgatggtaaaactccgcaaaaaaattcaataagtcaatctttaagatttcccaaaagtctttgaagaacccc 17152047  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  17152046 aaattaataccatctggtccgggacatttgaaactatcacaatcccacactgctgctttaatttcttccaacaagaaaggtttgatgagat 17151956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 100 - 710
Target Start/End: Complemental strand, 9827472 - 9826862
Alignment:
Q  100 aaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattc 199  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||  |||||||||    
T  9827472 aaaatgaaactcatcggtcagacaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaaccacgccacttagttggaaaattc 9827373  T
Q  200 attttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcg 299  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  9827372 attttaattatcacctcatctaagtaaccccaatccaccgagtcatacgccttttcaaaatccactttaaacataagtaactctttatcattacgcttcg 9827273  T
Q  300 catcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccat 399  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9827272 catcatctactaattcatttgctatcagaataccatccaaaatctgtctaccttttataaaagcagactgagaagcagacaccacacttccaaccaccat 9827173  T
Q  400 tctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctaccttt 499  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  9827172 tctcaaatgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccaccctttgaggactttcaaccttt 9827073  T
Q  500 ggaatcaaagctatgaaagaagaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatccc 599  Q
    ||||||||||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||        ||||| |  |||||||||||||| ||||    
T  9827072 ggaatcaaagctatgaaagaagaattaaggcctttagttaacttaccatgatggtaaaactccgcaaaaaaattcaataagtcaatctttaatatttccc 9826973  T
Q  600 aaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaagg 699  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||    
T  9826972 aaaagtctttgaagaaccccaaattaataccatctggtccgggacatttgaaactatcacaatcccacaccgctactttaatttcttccaacaagaaagg 9826873  T
Q  700 tttgatgagat 710  Q
    |||||||||||    
T  9826872 tttgatgagat 9826862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 22 - 710
Target Start/End: Original strand, 3516072 - 3516760
Alignment:
Q  22 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 121  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  3516072 catcatcacattaaggccttcagcagctaacagaaacagaaacggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcagtcgga 3516171  T
Q  122 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatcta 221  Q
    || |||||||||| |||||| |||||||| || ||||| ||||||||||||||| ||| ||||||| ||||||||  |||||||  || |||||||||||    
T  3516172 cagccattcactagcacagaagctgtagccgttgtaacgcactccataatccaagaacgccacttatacggaaaacacattttacccaacacctcatcta 3516271  T
Q  222 agtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagc 321  Q
    |||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| || | ||| || ||    
T  3516272 agtacctccagtccaccgaatcatatgccttttcaaaatccactttaaacataagtaactctttatcattacgctttgcatcatcaaccaattcgtttgc 3516371  T
Q  322 tatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagact 421  Q
    ||||||||||||||| ||||| ||| |||| || |||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| ||||| |||    
T  3516372 tatcagaataccatccaaaatatgtttacccttaataaaagcagactgagaagcagacaccacacttccaatcacctttctcaatcgattggccaaaact 3516471  T
Q  422 ttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaag 521  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||||| ||    
T  3516472 ttagataaaattttataaacactacttaccaaggctataggacgaaaatccgctaccctttgaggactttcaacctttggaatcaaagctatgaaagtag 3516571  T
Q  522 aattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaa 621  Q
    ||||||| ||||| ||||  ||||||||||| ||||||||||        ||||| | |||||||||||| || |||||||| ||||||||||| |||||    
T  3516572 aattaaggcctttagttaacttaccatgatggtaaaactccgcaaaaaaattcaataaatcaatctttaagatttcccaaaaatctttgaagaaacccaa 3516671  T
Q  622 attaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  3516672 attaataccatctggtccgggacatttaaaactatcacaatcccacaccgctgctttaatttcttctaacaggaaaggtttgatgagat 3516760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 74 - 687
Target Start/End: Original strand, 23823152 - 23823765
Alignment:
Q  74 ggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatcc 173  Q
    ||||||||||| ||||| |||||||||||||| || || || || ||||||||||| ||||| |||||||  || || || || ||||||||||||||||    
T  23823152 ggatccccttggcgaaggcctctttcaaaatggaattcgtctgtcggacaaccatttactaaaacagatgtcgttgccgttgtgacacactccataatcc 23823251  T
Q  174 aacaactccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacat 273  Q
    || | | ||||     ||||||||||||||||||||||||||| || ||||| | ||||||||| ||||||||||| |||||||| ||||||||||||||    
T  23823252 aagagcgccacaggtgcggaaaattcattttaatcatcacctcttccaagtacctccaatccacggagtcataagctttttcaaagtccactttaaacat 23823351  T
Q  274 aagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaa 373  Q
    ||||| |||||||| ||||||||||||||||||||| | |||||||||||| || || ||||| |||||||||||||| ||||||||||| || ||||||    
T  23823352 aagtaactctttattattacacttcgcatcatctaccaattcattagctattaggatgccatccaaaatctgtctaccctttataaaagctgattgagaa 23823451  T
Q  374 gcagacacaacacttccaaccaccattctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctg 473  Q
    |||||||||||| | || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| |    
T  23823452 gcagacacaacagtccccaccaccattctcaaacgattggccaaaacttttgataaaattttataaacactactcaccaaagcaataggacgaaaatcag 23823551  T
Q  474 ccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngtt 573  Q
    |||||||||||||  |||| ||||||||||||||| |||| ||||  |||||||| ||||| ||||  |||||||| |||||||| ||||        ||    
T  23823552 ccacccgttgagggttgtcgacctttggaatcaaaactataaaagtggaattaaggcctttagttaacttaccatggtgataaaagtccgcaaaaaaatt 23823651  T
Q  574 caaaagatcaatctttaatatatcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgct 673  Q
    ||| |  || ||||| || ||||||||||| || ||||| || |||||||||| ||||||||| || || | |||||||||||||||||||||||| |||    
T  23823652 caataagtcgatcttcaaaatatcccaaaactccttgaaaaaacccaaattaacaccatctggaccggggcttttgaaactatcacaatcccacaccgct 23823751  T
Q  674 gctttaatttcttc 687  Q
    ||||||||||||||    
T  23823752 gctttaatttcttc 23823765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 692
Target Start/End: Original strand, 10755451 - 10756121
Alignment:
Q  22 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 121  Q
    |||||||||||  ||||||||||| ||||| || |||| ||| || ||||| ||||||||||| || || || ||||||| |  ||||||||| || |||    
T  10755451 catcatcacattgagaccttcagctgctaaaaggaacaaaaacggtgaaagcggatccccttgccggagacccctttcaagagtaaactcatctgtcgga 10755550  T
Q  122 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatcta 221  Q
    || ||||| |||||||| ||||  || || || |||| |||||||||||||||  | | |||   |  | |||||||||| |||  ||| || ||||| |    
T  10755551 cacccattaactaacactgatgtcgttgccgttgtaatacactccataatccaggaccgccaaacactcagaaaattcatcttacacataacttcatcaa 10755650  T
Q  222 agtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagc 321  Q
     ||| | |||||| ||  | |||||||| || ||||||||||| ||||||| |||||  ||||| |  ||   ||| |||||||| |||| |||||| ||    
T  10755651 tgtacccccaatcaacaaaatcataagctttctcaaaatccaccttaaacaaaagtaaatctttcttcttgacctttgcatcatcaactaattcatttgc 10755750  T
Q  322 tatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagact 421  Q
     ||||  |||||||| | ||| |||||||| || |||||||| ||||| ||| ||||||| ||  | ||||||||| |||| |  ||||||||||| |||    
T  10755751 aatcaagataccatcgagaatttgtctacccttaataaaagcggactgtgaatcagacaccaccttaccaaccacctttctaagccgattagccaaaact 10755850  T
Q  422 ttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaag 521  Q
    ||||||||||||||||| |||||||||||||| |  || ||||||||||| |||||||| ||||||   || ||||| ||||| |||||||| ||||  |    
T  10755851 ttagataaaattttatacacactactcaccaaagagattggacgaaaatcagccacccgctgaggagactcaaccttaggaattaaagctataaaagttg 10755950  T
Q  522 aattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaa 621  Q
    | ||||||||||| |||| |||||||| | ||| ||||||||        ||||| | ||||||||| || | |||| |||| |||||||| || |||||    
T  10755951 agttaagacctttggttagtttaccattacgatgaaactccgcaaaaaaattcaacaaatcaatcttcaaaacatccgaaaagtctttgaaaaaacccaa 10756050  T
Q  622 attaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaaca 692  Q
    ||||| ||||||||  || |||||||| ||||||||||| ||||| |   |||||||||| ||||||||||    
T  10756051 attaacaccatctgaaccgggacatttaaaactatcacagtcccatatacctgctttaatctcttctaaca 10756121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 9820446 - 9820602
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  9820446 gacatcatcacatcaaggccttcagcagctaacacaaacaaaaaaggggaaagaggatccccttgacggagttctctttcaaaatgaaactcatcggtcg 9820545  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaac 176  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  9820546 gacaaccattcactaacactgatgctgttgcagttgtaacacactccataatccaac 9820602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 8596643 - 8596884
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||| |||| ||||||||| || |||||||  |||| ||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| || |    
T  8596643 gacatcattacattaagaccttctgctgctaacaagaacaaaaacggggaaagaggatccccttgacgaaggcctctctcaaaatggaactcatctgtcg 8596742  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||||||||| ||||| || ||||  ||||| || ||||||||||||||||||||| | | ||||     ||||||||||||||||||||||||||||||    
T  8596743 gacaaccattaactaaaactgatgtcgtagccgttgtaacacactccataatccaagagcgccacaattgcggaaaattcattttaatcatcacctcatc 8596842  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatc 261  Q
    ||| |||| |||||| || || ||||| || |||||||||||    
T  8596843 taaataactccaatcaacggaatcatatgctttttcaaaatc 8596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 16665364 - 16665630
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggg-gaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggtt 118  Q
    |||||||||||||  | |||||| || ||||| || |||  |||| || ||||| |||||||||||||| || || ||||||| || ||||||||| ||     
T  16665364 gacatcatcacatttaaaccttctgctgctaaaaggaaccaaaaatggagaaagcggatccccttgacggagacccctttcaagattaaactcatcagtc 16665463  T
Q  119 ggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcat 218  Q
    || || ||||| ||||||||||||||  | ||  | |||| |||||||||||||||| | | |||   | ||||||||||||| |||||||| ||||| |    
T  16665464 gggcacccattaactaacacagatgccatcgccattgtaatacactccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcgt 16665563  T
Q  219 ctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctcttt 285  Q
    | | ||| | |||||| || || |||||||| ||||||||||||||||||||||| |||| ||||||    
T  16665564 caatgtagccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactcttt 16665630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 30737907 - 30738062
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||| ||| ||||| |||||||||| ||||| ||| || ||||||||||||| | |||| || ||||| ||||| | |||||||||  | |    
T  30737907 gacatcatcacattaaggccttcggcagctaacaaaaacaaaaacggagaaagaggatcccttggacggagacctctctcaaagttaaactcatcaatcg 30738006  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaa 175  Q
    |||| ||||| ||||||||    |  || || || |||||||||||||||||||||    
T  30738007 gacatccattaactaacactaccgtcgttgccgttgtaacacactccataatccaa 30738062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 666
Target Start/End: Original strand, 15426098 - 15426150
Alignment:
Q  614 aaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    ||||||| ||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  15426098 aaccccatattaacaccatctggtccaggacttttaaaactgtcacaatccca 15426150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 42449687 - 42449719
Alignment:
Q  227 caccaatccaccgagtcataagccttttcaaaa 259  Q
    |||||||||||||||||||||||||||||||||    
T  42449687 caccaatccaccgagtcataagccttttcaaaa 42449719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 21309490 - 21309536
Alignment:
Q  55 aaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaa 101  Q
    ||||| |||||| ||||||||||| |||||||||| |||||||||||    
T  21309490 aaacaaaaaaggagaaagaggatcaccttgacgaaatcctctttcaa 21309536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 705
Target Start/End: Original strand, 23820477 - 23820531
Alignment:
Q  651 aactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgat 705  Q
    ||||||||||||||||||| ||| | |||||||| |||| | |||||||||||||    
T  23820477 aactatcacaatcccacacagcttccttaatttcatctagcgaaaaaggtttgat 23820531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 12333724 - 12333691
Alignment:
Q  239 gagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||||| |||||||||||||||||||||||||    
T  12333724 gagtcatacgccttttcaaaatccactttaaaca 12333691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 14310072 - 14310113
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaa 270  Q
    |||||||| |||||||||||| ||||||||||| ||||||||    
T  14310072 ccaatccagcgagtcataagctttttcaaaatcaactttaaa 14310113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 22 - 710
Target Start/End: Original strand, 12122974 - 12123662
Alignment:
Q  22 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 121  Q
    ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |  |||    
T  12122974 catcatcacattaagtccttcagcagctaacagaaacagaaacggggaaagaggatccccttgacggagtccactttcaaaatgaaactcatcagccgga 12123073  T
Q  122 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatcta 221  Q
    ||||||||||||| ||| || |||||||| || ||||| ||||||||||||||| ||| |||| ||  |||||||| |||||||  ||||||||||||||    
T  12123074 caaccattcactagcacggaagctgtagccgttgtaacgcactccataatccaagaacgccacatatgcggaaaatacattttacccatcacctcatcta 12123173  T
Q  222 agtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagc 321  Q
    |||| | |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || | ||| || ||    
T  12123174 agtacctccaatccaccgaatcatacaccttttcaaaatccactttaaacataagtagctctttatcattacgctttgcatcatcaaccaattcctttgc 12123273  T
Q  322 tatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagact 421  Q
    ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||| || |||||||||| |||| ||||||| ||||| ||||| |||    
T  12123274 tatcagaataccatccaaaatctgtctacccttaacaaaagcagactgagaagcagaaactacacttccaatcacctttctcaaccgattggccaaaact 12123373  T
Q  422 ttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaag 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||| ||    
T  12123374 ttagataaaattttataaacactactcaccaaggctataggacgaaaatctgctaccctttgaggactttcaacctttggaatcaaagctatgaaagtag 12123473  T
Q  522 aattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaa 621  Q
    ||||||| ||||| ||||  ||||||||||| ||||||||||        ||||| |  ||||||||||| || |||||||| ||||||||||| |||||    
T  12123474 aattaaggcctttagttaacttaccatgatggtaaaactccgcaaaaaaattcaataagtcaatctttaagatttcccaaaaatctttgaagaaacccaa 12123573  T
Q  622 attaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||||    
T  12123574 attaataccatctggtccaggacatttaaagctatcacaatcccacaccgctgctttaatttcttctaacaggaaagatttgatgagat 12123662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Complemental strand, 37074426 - 37073989
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  37074426 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgtagtcctctttcaaaatgaaactcatcggtcg 37074327  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
      ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||    
T  37074326 agcaaccattcactaacactgaagctgtagcagttgtaacacactccataatccaacaccgccacttagtcggaaaattcattttgatcatcacctcatc 37074227  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37074226 taagtaaccccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctacaacttcatta 37074127  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  37074126 gctatcagaataccatccaaaatctgtctaccttttataaaagcagactgagaagcagacaccacacttccaaccaccattcgcaaacgattagccaaga 37074027  T
Q  420 ctttagataaaattttataaacactactcaccaaggct 457  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37074026 ctttagataaaattttataaacactactcaccaaggct 37073989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 588170 - 588585
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||| ||| |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |    
T  588170 gacatcatcacattaaggccttcagcagctaacaaaaacaaaaacggggaaagaggatccccttggcgaagtcctctttcaaaatgaaactcatcagtcg 588269  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||| ||||| |||||||| |||| |||||| || || |||||||||||||||||| ||| |||   |  ||||||||||||||||  ||||||||||||    
T  588270 gacacccattaactaacactgatgttgtagccgttgtgacacactccataatccaagaacgccatagacgcggaaaattcattttagccatcacctcatc 588369  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    ||| || | |||||||||||| ||||| ||||| ||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||||| | ||||||     
T  588370 taaatacctccaatccaccgaatcatacgccttctcaaaatccaccttaaacataagtaactctttattattacgcttcgcatcatctaccaattcattt 588469  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||| ||||| |    
T  588470 gctatcagaataccatccaaaatctgtcttccctttataaaagcggactgagaagcaaacaccacactcccaaccaccattctcaatcgattggccaaaa 588569  T
Q  420 ctttagataaaatttt 435  Q
    |||| |||||||||||    
T  588570 cttttgataaaatttt 588585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 20 - 696
Target Start/End: Original strand, 47554675 - 47555351
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||  | | ||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
T  47554675 gacatcatcacatttaaatcttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 47554774  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||| ||||| |||||||||||||  || || || |||| ||| |||||||||||| | | | |   | ||||||||||||| |||||||| ||||||||    
T  47554775 gacacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgcgaaacacacggaaaattcatcttaatcataacctcatc 47554874  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
     | ||||| |||||| || || |||||||| ||||||||||||||||||||||| |||| |||||| |  ||   ||| |||||||| |||| ||||||     
T  47554875 aatgtaaccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcgactaattcattt 47554974  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| ||||||||||||||||||| |    
T  47554975 gcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaata 47555074  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    | || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| || ||||||   || ||||| ||||| ||||| || ||||     
T  47555075 cctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagcaataaaagt 47555174  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
     |||||||||||||| ||||  |||||||   ||| ||||||||        ||||  | ||||||||| || |  |||||||| ||||| ||||| |||    
T  47555175 ggaattaagacctttagttaacttaccattgcgatgaaactccgcaaaaaaattcagcacatcaatcttcaaaacctcccaaaagtctttaaagaaaccc 47555274  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaa 696  Q
    ||||||| |||||||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  47555275 aaattaacaccatctggtccggggcatttaaaactatcgcaatcccacacggctgctttaatttcttctaacaaaaa 47555351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 20 - 696
Target Start/End: Complemental strand, 22864583 - 22863907
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||  | ||||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||||| || ||||||||| || |    
T  22864583 gacatcatcacatttaaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcaagattaaactcatcagtcg 22864484  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    | || ||||| |||||||||||||  || || || |||| ||| |||||||||||| | | |||   | ||||||||||||| |||||||| ||||||||    
T  22864483 ggcacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatc 22864384  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
     | ||| | ||||||  | || |||||||| ||||||||||||||||||||||| |||| || ||| |  ||   ||| |||||||| |||| ||||||     
T  22864383 aatgtagccccaatcatcagaatcataagctttttcaaaatccactttaaacatgagtaactttttctttttgacctttgcatcatcgactaattcattt 22864284  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| ||||||||||||||||||| |    
T  22864283 gcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaata 22864184  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    | || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| || ||||||   || ||||| ||||| ||||  || ||||     
T  22864183 cctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagtaataaaagt 22864084  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
     |||||||||||||| ||||  |||||||   ||| ||||||||        ||||  | ||||||||| || |  |||||||| ||||||||||| |||    
T  22864083 ggaattaagacctttagttaacttaccattgcgatgaaactccgcaaaaaaattcagcacatcaatcttcaaaacctcccaaaagtctttgaagaaaccc 22863984  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaa 696  Q
    ||||||| |||||||||||| || ||||| ||  |||| ||||||||||| ||||||||||||||||||||||||||    
T  22863983 aaattaacaccatctggtccggggcatttaaagttatcgcaatcccacacggctgctttaatttcttctaacaaaaa 22863907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 20 - 453
Target Start/End: Original strand, 47550210 - 47550643
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||  | | ||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
T  47550210 gacatcatcacatttaaatcttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 47550309  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||| ||||| |||||||||||||  || || || |||| ||| |||||||||||| | | | |   | ||||||||||||| |||||||| ||||||||    
T  47550310 gacacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgcgaaacacacggaaaattcatcttaatcataacctcatc 47550409  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
     | ||||| |||||| || || |||||||| ||||||||||||||||||||||| |||| |||||| |  ||   ||| |||||||| |||| ||||||     
T  47550410 aatgtaaccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcgactaattcattt 47550509  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| ||||||||||||||||||| |    
T  47550510 gcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaata 47550609  T
Q  420 ctttagataaaattttataaacactactcaccaa 453  Q
    | || ||||||||||| || ||||||||||||||    
T  47550610 cctttgataaaattttgtacacactactcaccaa 47550643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 429 - 708
Target Start/End: Original strand, 589906 - 590185
Alignment:
Q  429 aaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaag 528  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| || || |||||||||||||| || || ||||  ||||||||    
T  589906 aaattttataaacactactcaccaaagctataggtcgaaaatctgccaccctttgagggctttcaacctttggaatcaacgcgataaaagtggaattaag 590005  T
Q  529 acctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaaattaata 628  Q
     ||||| ||||  ||||||||||| |||||||  |        ||||| | ||||||||| || || |||||||| || |||||||| ||||| ||||||    
T  590006 gcctttagttaacttaccatgatggtaaaactttgcaaaaaaattcaataaatcaatcttcaaaatttcccaaaaatccttgaagaaacccaagttaata 590105  T
Q  629 ccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgag 708  Q
    |||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||    
T  590106 ccatctgggccgggacatttaaaactatcacagtcccacaccgctgctttaatttcttccaacaaaaagggtttgatgag 590185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 20704329 - 20703926
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||| |||| ||| ||||| || ||||||| ||||| ||| |||||||||||||||||||| || || ||||| || |||||||||||||| || |    
T  20704329 gacatcataacatgaaggccttctgctgctaacaaaaacaaaaatggggaaagaggatccccttgccggagacctctctcgaaatgaaactcatccgtcg 20704230  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    | || ||||| |||| ||| || || || || || |||||||| ||||| ||||||   | ||||      |||||||||||||| | ||| ||||| ||    
T  20704229 ggcacccattaactagcacggaagcggttgccgttgtaacacattccattatccaaactcgccacacccttggaaaattcattttgaccataacctcctc 20704130  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    ||  |||| |||||| || || ||||| || || ||||||||||| |||||||||||||  ||||| |  | ||||||||||||||| ||||  ||||||    
T  20704129 tagataaccccaatcgactgaatcataggctttctcaaaatccaccttaaacataagtaagtctttcttttgacacttcgcatcatcaactaactcatta 20704030  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||| ||||| | ||| |||||||| ||||||||||| ||||||||| ||||||| ||| |||| |||||| ||||||| | ||| ||||| |    
T  20704029 gcaatcaaaatcccatcaagaatttgtctaccctttataaaagcggactgagaaccagacaccacatttcccaccacccttctcaatctattcgccaaaa 20703930  T
Q  420 cttt 423  Q
    ||||    
T  20703929 cttt 20703926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 20872373 - 20871970
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||| |||| ||| ||||| || ||||||| ||||| ||| |||||||||||||||||||| || || ||||| || |||||||||||||| || |    
T  20872373 gacatcataacatgaaggccttctgctgctaacaaaaacaaaaatggggaaagaggatccccttgccggagacctctctcgaaatgaaactcatccgtcg 20872274  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    | || ||||| |||| ||| || || || || || |||||||| ||||| ||||||   | ||||      |||||||||||||| | ||| ||||| ||    
T  20872273 ggcacccattaactagcacggaagcggttgccgttgtaacacattccattatccaaactcgccacacccttggaaaattcattttgaccataacctcctc 20872174  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    ||  |||| |||||| || || ||||| || || ||||||||||| |||||||||||||  ||||| |  | ||||||||||||||| ||||  ||||||    
T  20872173 tagataaccccaatcgactgaatcataggctttctcaaaatccaccttaaacataagtaagtctttcttttgacacttcgcatcatcaactaactcatta 20872074  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||| ||||| | ||| |||||||| ||||||||||| ||||||||| ||||||| ||| |||| |||||| ||||||| | ||| ||||| |    
T  20872073 gcaatcaaaatcccatcaagaatttgtctaccctttataaaagcggactgagaaccagacaccacatttcccaccacccttctcaatctattcgccaaaa 20871974  T
Q  420 cttt 423  Q
    ||||    
T  20871973 cttt 20871970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 702
Target Start/End: Complemental strand, 20696282 - 20696170
Alignment:
Q  590 aatatatcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttcta 689  Q
    ||||| |||||||||||||| || || ||||| | ||||||||| |||||||| | |||||||||||||||||||||||| ||||| ||||| || || |    
T  20696282 aatatctcccaaaattctttaaaaaatcccaagtgaataccatccggtccagggcttttgaaactatcacaatcccacaccgctgccttaatctcctcca 20696183  T
Q  690 acaaaaaaggttt 702  Q
     |||||| |||||    
T  20696182 tcaaaaagggttt 20696170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 702
Target Start/End: Complemental strand, 20701760 - 20701648
Alignment:
Q  590 aatatatcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttcta 689  Q
    ||||| |||||||||||||| || || ||||| | ||||||||| |||||||| | |||||||||||||||||||||||| ||||| ||||| || || |    
T  20701760 aatatctcccaaaattctttaaaaaatcccaagtgaataccatccggtccagggcttttgaaactatcacaatcccacaccgctgccttaatctcctcca 20701661  T
Q  690 acaaaaaaggttt 702  Q
     |||||| |||||    
T  20701660 tcaaaaagggttt 20701648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 24820494 - 24820559
Alignment:
Q  22 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacg 87  Q
    ||||||||||| ||| |||||||| |||| |||||||||||| |||||||||||||||||||||||    
T  24820494 catcatcacattaaggccttcagccgctagcagaaacagaaacggggaaagaggatccccttgacg 24820559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 13441540 - 13441595
Alignment:
Q  217 atctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||| |||| ||| |||||||| ||||||||||||||||||||||| |||||||    
T  13441540 atctaaataaccccagtccaccgaatcataagccttttcaaaatccaccttaaaca 13441595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 27278672 - 27278767
Alignment:
Q  290 ttacacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaaca 385  Q
    ||||||||||||||||| |||| |||||| ||||||| ||   |||| | |||  ||||||| || ||||| ||| ||||||||||||||||||||    
T  27278672 ttacacttcgcatcatcaactaattcatttgctatcaaaacctcatccagaattcgtctacccttgataaaggcatactgagaagcagacacaaca 27278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 678
Target Start/End: Original strand, 17078874 - 17078956
Alignment:
Q  596 tcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgcttt 678  Q
    |||||||| ||||||| ||| || | ||||| |||||| || ||||||||||| || ||||||||||||||||| || |||||    
T  17078874 tcccaaaaatctttgatgaaaccaatattaacaccatccggaccaggacatttaaagctatcacaatcccacaccgcagcttt 17078956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 18768706 - 18768782
Alignment:
Q  38 ccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 114  Q
    |||||||| |||| || ||||| ||||||||| ||||||||||| ||||| |  ||||| | |||||||||||||||    
T  18768706 ccttcagccgctagcaaaaacaaaaaaggggacagaggatccccctgacgtaaacctctctgaaaatgaaactcatc 18768782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 669
Target Start/End: Original strand, 18307157 - 18307228
Alignment:
Q  598 ccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacac 669  Q
    |||||| |||||||  || |||||||||| ||| |||||||||||||  ||  |||||||||||||||||||    
T  18307157 ccaaaaatctttgataaaacccaaattaacaccgtctggtccaggactcttataactatcacaatcccacac 18307228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 45994070 - 45994113
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||| | ||||||||| |||||||||||||||||||||||||    
T  45994070 ccaatcaatcgagtcatacgccttttcaaaatccactttaaaca 45994113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 32851034 - 32850993
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaa 270  Q
    |||||| ||| | |||||||||||||||||||||||||||||    
T  32851034 ccaatcgaccaaatcataagccttttcaaaatccactttaaa 32850993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 22 - 710
Target Start/End: Complemental strand, 18294229 - 18293541
Alignment:
Q  22 catcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgga 121  Q
    |||| |||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  18294229 catcgtcacattaaggccttcagcagctaacaaaaatagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaataaaactcatcagttgga 18294130  T
Q  122 caaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatcta 221  Q
    ||||||||||||| |||||| |||||||| || ||||| ||||||||||||||| ||| |||| ||  |||||||| |||||||  |||||||||| |||    
T  18294129 caaccattcactagcacagaagctgtagccgttgtaacgcactccataatccaagaacgccacatacgcggaaaatacattttacccatcacctcaccta 18294030  T
Q  222 agtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagc 321  Q
    |||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || | ||| || ||    
T  18294029 agtacctccaatccaccgaatcatacgccttttcaaaatccactttaaacataagtagctctttatcattacgctttgcatcatcaaccaattcgtttgc 18293930  T
Q  322 tatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagact 421  Q
    ||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| ||||| |||    
T  18293929 tatcagaataccatccaaaatctgtctacccttaacaaaagcagactgagaagcagacaccacacttccaatcacctttctcaaccgattggccaaaact 18293830  T
Q  422 ttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaag 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || || ||||||||||||||||||| ||||  ||    
T  18293829 ttagataaaattttataaacactactcaccaaggctataggacgaaaatctgctaccctttgagggctttcaacctttggaatcaaagctacgaaaatag 18293730  T
Q  522 aattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaa 621  Q
    ||||||| |||||  |||   |||||||||| ||||||||||        ||||| | |||||||||||| || |||||||| || |||||||| |||||    
T  18293729 aattaaggcctttatttaacctaccatgatggtaaaactccgcaaaaaaattcaataaatcaatctttaagatttcccaaaaatccttgaagaaacccaa 18293630  T
Q  622 attaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    ||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  18293629 attaatatcatctggtccgggacatttaaagctatcacaatcccacaccgctgctttaatttcttctaacaggaaaggtttgatgagat 18293541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 710
Target Start/End: Original strand, 2895589 - 2896280
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||| | ||| |||||||| |||| |||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| || |    
T  2895589 gacatcatcacgttaaggccttcagccgctagcagaaacagaaacggagatagaggatccccttgacggagtcctctttcaaaatgaaactcatcagtcg 2895688  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    | |||||||||||||  || || ||||||||||| ||||| ||||||||||||||| | | ||||  |  ||||||   |||||||  |||||| |||||    
T  2895689 ggcaaccattcactagtactgaagctgtagcagttgtaacgcactccataatccaagagcaccacagacgcggaaataacattttatccatcacttcatc 2895788  T
Q  220 taagtaacaccaatccaccgagtcataagcctttt-caaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatt 318  Q
    |||||| | |||||||||| | || || ||||||| |||| |||||||| ||||||||||||||||||||||||   || ||||||||||| | ||||||    
T  2895789 taagtacctccaatccaccaaatcgtacgcctttttcaaagtccactttgaacataagtagctctttatcattatgttttgcatcatctaccaattcatt 2895888  T
Q  319 agctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaag 418  Q
     ||||||||||||||||| |||||||||||||| || | ||||||| |||||||||| ||||| ||||| ||||||||| ||||||| ||||| |||||     
T  2895889 tgctatcagaataccatccaaaatctgtctacccttaacaaaagcacactgagaagccgacaccacactaccaaccacctttctcaaccgattggccaaa 2895988  T
Q  419 actttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaag 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||||||||||||||||||||||    
T  2895989 actttagacaaaattttataaacactactcaccaaggctataggacgaaaatcagctaccctttgaggactttcaacctttggaatcaaagctatgaaag 2896088  T
Q  519 aagaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccc 618  Q
    |||||||||| ||||| ||||  ||||||||||| ||||||||||       |||||| | |||||||||||| || |||||||| |||||||| || ||    
T  2896089 aagaattaaggcctttagttaacttaccatgatggtaaaactccgcaaaaaagttcaataaatcaatctttaaaatgtcccaaaagtctttgaaaaagcc 2896188  T
Q  619 caaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  2896189 caaattaataccatctggtccaggacatttaaaactatcacaatcccatactgctgctttaatttcttccaacaagaaaggtttgatgagat 2896280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 696
Target Start/End: Complemental strand, 5390353 - 5389684
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||  | |||||| |||||||| || |||| ||| || ||||| |||||||||||||| || || |||||||    ||||||||  || |    
T  5390353 gacatcatcacatttaaaccttctgcagctaataggaacaaaaacggagaaagcggatccccttgacggaggcccctttcaaggataaactcattagtcg 5390254  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    | || ||||| |||||||||||||| || || || || | |||||||||||||||| | | | |   | ||  ||||||||| |||||||| ||||||||    
T  5390253 ggcacccattaactaacacagatgccgttgccgttgttatacactccataatccaagaccgctaaacacacaaaaaattcatcttaatcataacctcatc 5390154  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
     |  |||| |||||| || || |||||||| |||||||||||||| |||||||| |||| || ||| |  |||  ||| |||||||| |||| ||||||     
T  5390153 aatataaccccaatcaacagaatcataagctttttcaaaatccaccttaaacatgagtaactatttttttttaaccttagcatcatcgactaattcattt 5390054  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||||||||| | ||| |||||||| || ||||| |||||||||| | ||||||| ||| | || | |||| ||||||||||||||||||| |    
T  5390053 gcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagtatcagacaccacattacctatcacccttctcaaacgattagccaata 5389954  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    | || ||||||||||| || |||||||||||||| | ||| || | ||| || ||||| || || ||    || ||||| ||||| ||||| || ||||     
T  5389953 cctttgataaaattttgtacacactactcaccaaagatattggcctaaagtcagccacacgctgtggggattccaccttaggaattaaagcaataaaagt 5389854  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
     |||||||| ||||| ||       ||||   ||| ||||||||         |||  | ||||||||| || |  |||||||| |||||||| || |||    
T  5389853 ggaattaaggcctttggt-------ccattgcgatgaaactccgcaaaaaaaatcagcacatcaatcttcaaaacctcccaaaagtctttgaaaaaaccc 5389761  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaa 696  Q
    || |||| |||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| |||||    
T  5389760 aagttaacaccatctggtccgggacatttaaagctatcacaatcccacactgctgccttaatttcttctaataaaaa 5389684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 15675314 - 15675369
Alignment:
Q  217 atctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||    
T  15675314 atctaagtaaccccagtccaccgaatcataagccttttcaaagtccactttaaaca 15675369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 12150317 - 12150240
Alignment:
Q  37 accttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatc 114  Q
    ||||||| ||||||| ||||| |||||| | ||||||||||| ||||||||||| ||||| || |||  |||||||||    
T  12150317 accttcaacagctaatagaaaaagaaaacgagaaagaggatcaccttgacgaagccctctctccaaaataaactcatc 12150240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 666
Target Start/End: Original strand, 16480013 - 16480081
Alignment:
Q  598 ccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||||| ||||| | |||||||| ||||||| |||| ||||| |||| ||| |||||||||||||||||    
T  16480013 ccaaaaatctttaatgaaccccacattaatatcatcaggtcccggacttttaaaactatcacaatccca 16480081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 680
Target Start/End: Original strand, 17256220 - 17256304
Alignment:
Q  596 tcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaa 680  Q
    |||||||||||||| | ||| || ||||| | |||||| || || |||| ||| ||| ||||||||||||| |||||||||||||    
T  17256220 tcccaaaattctttaatgaatccaaaattcacaccatccggccctggacttttaaaattatcacaatcccaaactgctgctttaa 17256304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 666
Target Start/End: Complemental strand, 18487377 - 18487309
Alignment:
Q  598 ccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||||| ||||| | |||||||| |||||||||||| ||||| ||||  || |||||||||||||||||    
T  18487377 ccaaaaatctttaatgaaccccacattaataccatcaggtcccggactcttaaaactatcacaatccca 18487309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 666
Target Start/End: Complemental strand, 12061055 - 12061006
Alignment:
Q  617 cccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||| ||||| |||||||| |||||||| ||||||||| |||||||||||    
T  12061055 cccacattaacaccatctgatccaggacttttgaaactgtcacaatccca 12061006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 666
Target Start/End: Original strand, 20618255 - 20618304
Alignment:
Q  617 cccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||| ||||| |||||||||||||| || ||||||||| |||||||||||    
T  20618255 cccatattaacaccatctggtccagaacttttgaaactgtcacaatccca 20618304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 25351717 - 25351758
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaa 270  Q
    |||||| || ||||||||||||||||||||||| ||||||||    
T  25351717 ccaatcaacagagtcataagccttttcaaaatcaactttaaa 25351758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 8e-97; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 20 - 696
Target Start/End: Original strand, 29326584 - 29327260
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||    ||||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
T  29326584 gacatcatcacatttgaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 29326683  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||| ||||| ||||||||| |||| || || || |||| ||| |||||||||||| | | |||   | ||||||||||||| |||||||| ||||||||    
T  29326684 gacacccattaactaacacaaatgccgtcgccgtagtaatacattccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatc 29326783  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
     | ||| | |||||| || || |||||||| ||||||||||||||||||||||| |||| |||||| |  ||   ||| |||||||| |||| ||||||     
T  29326784 aatgtagccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttcttttttacctttgcatcatcgactaattcattt 29326883  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| ||||||| ||| | || | |||| ||||||||||||||||||| |    
T  29326884 gcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagacaccacattacctatcacccttctcaaacgattagccaata 29326983  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    | || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| || ||||||   || ||||| ||||| ||||| || ||||     
T  29326984 cctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagcaataaaagt 29327083  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
     |||||||||||||| ||||  |||||||   ||| ||||||||        ||||  | ||||||||| || |  |||||||| ||||||||||| |||    
T  29327084 ggaattaagacctttagttaacttaccattgcgatgaaactccgcaaaaaaattcagcacatcaatcttcaaaacctcccaaaagtctttgaagaaaccc 29327183  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaa 696  Q
    ||||||| |||||||||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||    
T  29327184 aaattaacaccatctggtccggggcatttaaagctatcgcaatcccacacggctgctttaatttcttctaacaaaaa 29327260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 6677430 - 6677320
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  6677430 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgtagtcctctttcaaaatgaaactcatcggtcg 6677331  T
Q  120 gacaaccattc 130  Q
    | |||||||||    
T  6677330 ggcaaccattc 6677320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 11267411 - 11267566
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||| |||| ||||||||| |||||||||||||||| ||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||| || |    
T  11267411 gacatcataacattaagaccttccgcagctaacagaaacaaaaatggggagagagggtccccttggcggagtcctctctcaaaatgaaactcatcagtcg 11267510  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaa 175  Q
    |||||||||| |||| ||| ||||  ||||| || |||||||| ||||||||||||    
T  11267511 gacaaccatttactagcactgatgtcgtagctgttgtaacacattccataatccaa 11267566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 50 - 702
Target Start/End: Complemental strand, 22112963 - 22112312
Alignment:
Q  50 aacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtag 149  Q
    |||||||||| ||||||||| ||||| ||||||||||| |  ||||||||||||  |||||| || || ||||| ||||| || ||||| || | ||| |    
T  22112963 aacagaaacaaaaaaggggagagagggtccccttgacgcaagcctctttcaaaacaaaactcgtctgtcggacacccatttaccaacactgaagttgttg 22112864  T
Q  150 cagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagc 249  Q
    | || || || ||||||||||||||  ||| ||| | | |  | ||||||||||||  |||||| ||||| | ||| | ||||||||||||||| || ||    
T  22112863 ctgtcgttacgcactccataatccaggaacgcca-taatatcggaaattcattttagacatcacttcatcaaggtacccccaatccaccgagtcgtatgc 22112765  T
Q  250 cttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtcta 349  Q
    ||| |||||||| |||||||| | ||| |  ||||||| |      || |||||||| || |  ||||| |||||||  || ||||| ||||| |   ||    
T  22112764 cttctcaaaatcaactttaaaaagaagaatatctttattagactttttagcatcatcaacaatctcatttgctatcaatatgccatccaaaattttcata 22112665  T
Q  350 ccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagactttagataaaattttataaacactactca 449  Q
    || || || || || |||||||  |  || |||||| | || |||||  ||||||| |  |||||||  ||||| || | ||||||||||||||| ||||    
T  22112664 cccttaatgaatgccgactgagttgtggatacaacattaccgaccacatttctcaacctgttagccagcactttggaaagaattttataaacactgctca 22112565  T
Q  450 ccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaagacctttcgttattttaccatg 549  Q
    | |  |  || | ||||||||| ||||||||||| ||| | || ||||||||||| || ||||| ||||  || || |||||||| || |  ||||| ||    
T  22112564 ctagagaaattgtacgaaaatcagccacccgttgcggattatcaacctttggaattaatgctataaaagttgagttgagacctttagtaagcttaccgtg 22112465  T
Q  550 atgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttg 649  Q
    ||| ||||||| ||        ||||  | ||||||||| || | ||||||||| ||||| || ||  | |||||||||||||| ||||| |||||||||    
T  22112464 atggtaaaactacgcaaaaaaattcatcaaatcaatcttcaacaaatcccaaaactctttaaaaaatacaaaattaataccatcaggtcccggacatttg 22112365  T
Q  650 aaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggttt 702  Q
    || |||||||| ||||| | |||||| || |||||||| |||||||| |||||    
T  22112364 aagctatcacagtcccagattgctgcctttatttcttccaacaaaaagggttt 22112312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 363
Target Start/End: Complemental strand, 41767543 - 41767413
Alignment:
Q  233 tccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaatac 332  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||| |  |  ||||||||  |||   | |||| |||||| |||||||| |||||||| ||||    
T  41767543 tccaccgagtcataagcttttccaaaatctactttgaacattaaaatttctttatccatacgtcttgcattatctaccacttcattggctatcaggatac 41767444  T
Q  333 catctaaaatctgtctaccttttataaaagc 363  Q
    |||||||||| ||| | ||||| ||||||||    
T  41767443 catctaaaatttgtttccctttaataaaagc 41767413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 666
Target Start/End: Original strand, 26371382 - 26371431
Alignment:
Q  617 cccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||| ||||| ||||||||||||||||| ||||||||| |||||||||||    
T  26371382 cccatattaacaccatctggtccaggacttttgaaactgtcacaatccca 26371431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 666
Target Start/End: Complemental strand, 21822897 - 21822829
Alignment:
Q  598 ccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||||| ||||| | |||||||| ||||||| |||| ||||| |||| ||| |||||||||||||||||    
T  21822897 ccaaaaatctttaatgaaccccacattaatatcatcaggtcccggacttttaaaactatcacaatccca 21822829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 25591787 - 25591830
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  25591787 ccaatctaccgagtcatatgccttttcaaaatccactttgaaca 25591830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 27525644 - 27525722
Alignment:
Q  190 cggaaaattcattttaatcatcacctcatctaagt-aacaccaatccaccgagtcataagccttttcaaaatccacttt 267  Q
    ||||||||||||||||  |||||| ||||| | || ||| ||||||||| |||||||| ||||| |||||||| |||||    
T  27525644 cggaaaattcattttagacatcacttcatcaaggtaaaccccaatccactgagtcatatgccttctcaaaatcaacttt 27525722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 680
Target Start/End: Original strand, 33171537 - 33171603
Alignment:
Q  614 aaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaa 680  Q
    ||||| || |||||||||||||| || || |  || |||||||||||||||||||||||||| ||||    
T  33171537 aacccaaagttaataccatctggacccgggctcttaaaactatcacaatcccacactgctgccttaa 33171603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 27526073 - 27526118
Alignment:
Q  619 caaattaataccatctggtccaggacatttgaaactatcacaatcc 664  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||||||    
T  27526073 caaattaataccatcaggtctcggacatttgaagctatcacaatcc 27526118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 41767739 - 41767686
Alignment:
Q  37 accttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaag 90  Q
    ||||||||| || |||||||| | ||||||||| ||||| ||||||||||||||    
T  41767739 accttcagctgccaacagaaataaaaaaggggagagagggtccccttgacgaag 41767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 2e-94; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 49371153 - 49371496
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||| |||| |||||||||| ||||||||| ||||| ||| ||| ||||||||||||||||||| || ||||| |||||||| |||||||| || |    
T  49371153 gacatcattacattaagaccttcaacagctaacaaaaacaaaaacgggaaaagaggatccccttgacggaggcctctctcaaaatggaactcatctgtcg 49371252  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||||||||| ||||| || ||||| ||||| |  ||||||||||||||||||||| | | ||||  |  ||||||||||||||||||||||||||||||    
T  49371253 gacaaccatttactaaaactgatgccgtagccgctgtaacacactccataatccaagagcgccacagatgcggaaaattcattttaatcatcacctcatc 49371352  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
    |||||| | ||||||||| || ||||| || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||    
T  49371353 taagtacctccaatccacggaatcatatgctttttcaaaatccactttaaacataagtaactctttattattacacttcgcatcatctaccaattcatta 49371452  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagc 363  Q
    ||||| ||||| ||||| |||||||||||||| ||||| |||||    
T  49371453 gctattagaatcccatccaaaatctgtctaccctttatgaaagc 49371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 191 - 539
Target Start/End: Original strand, 26997517 - 26997864
Alignment:
Q  191 ggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcat 290  Q
    |||||||||||||||  ||||||||| || |  || | |||||| || ||||| || ||||| |||||| |||| |||||||||||||||||||| | ||    
T  26997517 ggaaaattcattttacccatcacctcgtcaagatacccccaatcaacagagtcgtaggccttctcaaaacccaccttaaacataagtagctctttcttat 26997616  T
Q  291 tacacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttcc 390  Q
    |    ||||||||||| ||||  || ||||| |||| |||| |||| | ||| ||||| ||||| ||||| |||||||||||||||| ||| ||  | ||    
T  26997617 tttt-ttcgcatcatcaactaactcgttagcaatcaaaatagcatccagaatttgtctccctttaataaaggcagactgagaagcagtcaccactttacc 26997715  T
Q  391 aaccaccattctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactg 490  Q
    ||| ||||||||||| | ||||||||| ||||| || |  ||||||||||||||||| |||||   ||| ||||| ||||||||||| |||||||||||     
T  26997716 aacaaccattctcaatctattagccaacactttggaaaggattttataaacactactaaccaaatatattggacggaaatctgccactcgttgaggactc 26997815  T
Q  491 tctacctttggaatcaaagctatgaaagaagaattaagacctttcgtta 539  Q
    || |||||||| ||||| ||||| |||| ||||||||||||||||||||    
T  26997816 tcgacctttgggatcaaggctataaaagtagaattaagacctttcgtta 26997864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 62 - 702
Target Start/End: Original strand, 48711422 - 48712061
Alignment:
Q  62 aaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgtagcagtggtaacac 161  Q
    |||||||| | ||| ||||||| ||| |  ||||||||||||  ||||||||| || ||||| ||||| || || || || ||||| || || || ||||    
T  48711422 aaaggggagatagggtccccttaacgcaagcctctttcaaaacaaaactcatctgtcggacacccatttaccaagactgaagctgttgctgtcgttacac 48711521  T
Q  162 actccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatc 261  Q
    |||||||||||||   || |||     |||||||||||||||||  |||||| ||||| |  || | |||||||||||||||||| ||||| ||||||||    
T  48711522 actccataatccaggcacgccataataacggaaaattcattttagacatcacttcatcaagatacccccaatccaccgagtcatatgccttctcaaaatc 48711621  T
Q  262 cactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaa 361  Q
     |||||||| | ||| || ||||||| |      || |||||||| || |  |||||||| |||| |||  |||| ||||| ||||||||||| || ||     
T  48711622 aactttaaaaagaagaagatctttattagactttttagcatcatcaacaagctcattagcgatcaaaatgtcatccaaaatttgtctacctttaatgaat 48711721  T
Q  362 gcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaagactttagataaaattttataaacactactcaccaaggctatag 461  Q
    || |||||||  |  || |||||| | || |||||  |||| || |  |||| ||  ||||| || ||||||||||||||||| ||||| |  |  || |    
T  48711722 gccgactgagttgtggaaacaacattaccgaccacatttcttaacctgttagacagcactttggacaaaattttataaacactgctcactagagaaattg 48711821  T
Q  462 gacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaagacctttcgttattttaccatgatgataaaactc 561  Q
    |||| ||||| ||||||||||| ||  | || ||||||||||| |||||||| ||||  || || |||||||| || |  ||||| ||||| ||||||||    
T  48711822 gacggaaatcagccacccgttgtgggttatcaacctttggaattaaagctataaaagttgagttgagacctttagtaagcttaccgtgatggtaaaactc 48711921  T
Q  562 cgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaa 661  Q
    ||        ||||| | ||||||||| || | |||| |||| ||||| || || ||||| ||| ||||||| ||||| ||||||||||| |||||||||    
T  48711922 cgcaaaaaaattcaacaaatcaatcttcaacaaatcctaaaaatctttaaa-aatcccaagttagtaccatcaggtcccggacatttgaagctatcacaa 48712020  T
Q  662 tcccacactgctgctttaatttcttctaacaaaaaaggttt 702  Q
    ||||| | |||||| || |||||||| ||||||||||||||    
T  48712021 tcccatattgctgcctttatttcttccaacaaaaaaggttt 48712061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 39431758 - 39431823
Alignment:
Q  207 tcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||| |||||||| | ||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  39431758 tcataacctcatcaaggtaaccccaatcaacagagtcataagccttttcaaaatccactttaaaca 39431823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 20797132 - 20797197
Alignment:
Q  207 tcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||| |||||||| | ||||| |||||| || ||||| ||||||||||||||||||||||||||||    
T  20797132 tcataacctcatcaaggtaaccccaatcaacagagtcgtaagccttttcaaaatccactttaaaca 20797197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 32351970 - 32351915
Alignment:
Q  217 atctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    ||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||    
T  32351970 atctaagtaaccccagtccaccgaatcataagccttctcaaaatccaccttaaaca 32351915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 19203445 - 19203496
Alignment:
Q  236 accgagtcataagccttttcaaaatccactttaaacataagtagctctttat 287  Q
    ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||    
T  19203445 accgagtcatatgccttctcgaaatcaactttaaacataagcagctctttat 19203496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 19205855 - 19205906
Alignment:
Q  236 accgagtcataagccttttcaaaatccactttaaacataagtagctctttat 287  Q
    ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||    
T  19205855 accgagtcatatgccttctcgaaatcaactttaaacataagcagctctttat 19205906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 52207138 - 52207205
Alignment:
Q  191 ggaaaattcattttaatcatcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaa 258  Q
    ||||||||||||||||||||||| |||||||||||   | ||| |||||| || || |||||||||||    
T  52207138 ggaaaattcattttaatcatcacatcatctaagtacttctaattcaccgaatcgtatgccttttcaaa 52207205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 702
Target Start/End: Original strand, 26997921 - 26998027
Alignment:
Q  596 tcccaaaattctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaa 695  Q
    |||||||| |||||  | || ||||||||||| |||||||||||  |||| ||  |  ||||||||||||| | |||||||||||| || ||||| | ||    
T  26997921 tcccaaaaatctttataaaaacccaaattaattccatctggtccgtgacacttatagttatcacaatcccatattgctgctttaatctcatctaatagaa 26998020  T
Q  696 aaggttt 702  Q
    |||||||    
T  26998021 aaggttt 26998027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 39431604 - 39431698
Alignment:
Q  53 agaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaacacagatgctgt 147  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||| |||| ||   |||| |||||| | |||| ||| ||||||| |||||| |||||    
T  39431604 agaaacagaaaaggggacagagggtccccctgacggagtccccttttaagtggaaattcatcgataggactaccgttcactagcacagaagctgt 39431698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 7953226 - 7953197
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaa 258  Q
    ||||||||||||||||||||||||||||||    
T  7953226 ccaatccaccgagtcataagccttttcaaa 7953197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 20 - 696
Target Start/End: Complemental strand, 10800516 - 10799841
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||||||||  | ||||||||| ||||| || |||| ||| || ||||| |||||||||||||| || || ||||| | || ||||||||| || |    
T  10800516 gacatcatcacatttaaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcg 10800417  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||| ||||| |||||||||||||  || || || |||| ||| |||||||||||| | | | |   | ||||||||||||| |||||||| ||||||||    
T  10800416 gacacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgctaaacacacggaaaattcatcttaatcataacctcatc 10800317  T
Q  220 taagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcatta 319  Q
     | ||||| |||||| || || |||||||| ||||||||||||||||||||||| |||| |||||| |  ||   ||| |||||||| |||| ||||||     
T  10800316 aatgtaaccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttcttttttacctttgcatcatcgactaattcattt 10800217  T
Q  320 gctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctcaaacgattagccaaga 419  Q
    || |||| ||||||||| | ||| |||||||| || ||||| |||||||||||| |||| || ||| | || | |||| ||||||||||||||||||| |    
T  10800216 gcaatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaata 10800117  T
Q  420 ctttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaaga 519  Q
    | || ||||||||||| || |||||||||||||| | ||| || | |||||| ||||| || ||||||   || ||||| ||||| ||||| || ||||     
T  10800116 cctttgataaaattttgtacacactactcaccaaagatattggcctaaaatcagccacacgctgaggagattccaccttaggaattaaagcaataaaagt 10800017  T
Q  520 agaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaattctttgaagaacccc 619  Q
     |||||||||||||| ||||  ||| |||   ||| ||||||||        ||||  | ||||||||| || |  |||||||| ||||| ||||| |||    
T  10800016 ggaattaagacctttagttaacttatcattgcgatgaaactccgtaaaaaaattcagcacatcaatcttcaaaacctcccaaaagtctttaaagaaaccc 10799917  T
Q  620 aaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaa 696  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  10799916 aaattaacaccatctggtccagggcatttaaaactatcgcaatcccacacagctgc-ttaatttcttctaacaaaaa 10799841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 13878154 - 13878090
Alignment:
Q  208 catcacctcatctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    ||||||||| || ||||| | |||||| || |||||||| |||||||||||||||||||||||||    
T  13878154 catcacctcctccaagtacccccaatcaacagagtcatacgccttttcaaaatccactttaaaca 13878090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 4986711 - 4986668
Alignment:
Q  229 ccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  4986711 ccaatcaatcgagtcataagccttttcaaaatccactttaaaca 4986668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 16374761 - 16374706
Alignment:
Q  217 atctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| ||||| |||||||    
T  16374761 atctaagtaaccccaatccaccgaatcataagtcttttcaaagtccaccttaaaca 16374706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 666
Target Start/End: Original strand, 25586239 - 25586288
Alignment:
Q  617 cccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    |||| ||||| ||||||||||||||||| ||||||||| |||||||||||    
T  25586239 cccatattaacaccatctggtccaggacttttgaaactgtcacaatccca 25586288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 36158642 - 36158690
Alignment:
Q  224 taacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    |||| |||||| || |||||||||||||||||||||||||| |||||||    
T  36158642 taaccccaatcaacagagtcataagccttttcaaaatccaccttaaaca 36158690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 36493693 - 36493781
Alignment:
Q  47 gctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttggacaaccattcactaa 135  Q
    ||||||||||| |||||||||||||||||||| ||||| || |  || || || ||| |||||||||| ||||| | |||||| |||||    
T  36493693 gctaacagaaaaagaaaaggggaaagaggatcaccttggcgtaaccccctctctaaaggaaactcatcagttgggctaccattaactaa 36493781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 43247187 - 43247138
Alignment:
Q  223 gtaacaccaatccaccgagtcataagccttttcaaaatccactttaaaca 272  Q
    ||||| |||||| || ||||| |||| |||||||||||||||||||||||    
T  43247187 gtaaccccaatcaacggagtcgtaagtcttttcaaaatccactttaaaca 43247138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 45254476 - 45254443
Alignment:
Q  239 gagtcataagccttttcaaaatccactttaaaca 272  Q
    |||||||||||||||||||||||||| |||||||    
T  45254476 gagtcataagccttttcaaaatccaccttaaaca 45254443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 165; Significance: 7e-88; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 20 - 702
Target Start/End: Complemental strand, 223564 - 222867
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    ||||||||||||| || ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||| ||||  | ||||||||| || |    
T  223564 gacatcatcacatgaaaaccttcagcagctaacagaaacaaaaacggagaaagaggatccccttgacgaaggcctctctcaagcttaaactcatcagtag 223465  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatc 219  Q
    |||| ||||| |||||||| || |   | || || || |||||||||||||||||| | | |||   |   |||||||||||||||| ||||||||| ||    
T  223464 gacatccattgactaacactgaagtcatggccgttgtgacacactccataatccaagatcgccataaacgtggaaaattcattttaaccatcacctcctc 223365  T
Q  220 taagtaacaccaatccaccgagtcataagc-----------cttt-tcaaaatccactttaaacataagtagctctttatcatt---acacttcgcatca 304  Q
    |||||||| |||||| || || ||||||||           |||| ||||||||||| |||||||||||||  ||||| |  ||   |||||| ||||||    
T  223364 taagtaaccccaatcaactgaatcataagctgaatcataagctttctcaaaatccaccttaaacataagtaaatcttttttttttttacactttgcatca 223265  T
Q  305 tctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttccaaccaccattctca 404  Q
    || |||| |||||| ||||| | ||| ||||| | ||| |||||||| || ||||||||||| |||||| |||| |||||| |||| |||| ||||||||    
T  223264 tcaactaattcatttgctattaaaatcccatccagaatttgtctacccttgataaaagcagattgagaaccagatacaacatttcccaccatcattctca 223165  T
Q  405 aacgattagccaagactttagataaaattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaat 504  Q
    | ||||| ||||| ||||| || | |||||||||||||||||| ||||| | ||| ||||||||||| ||||||||||||||||| || ||||| || ||    
T  223164 atcgattggccaacactttggaaagaattttataaacactactaaccaaagatatcggacgaaaatcagccacccgttgaggactttcaaccttagggat 223065  T
Q  505 caaagctatgaaagaagaattaagacctttcgttattttaccatgatgataaaactccgnnnnnnngttcaaaagatcaatctttaatatatcccaaaat 604  Q
    ||||||||| ||||  |||||| | ||||| || |  ||||||| ||||||||| || |        ||||  | ||||| ||| || | |||||||||     
T  223064 caaagctataaaagtggaattagggcctttagtaagcttaccattatgataaaattcagcaaaaaaattcagcaaatcaaccttcaagacatcccaaaaa 222965  T
Q  605 tctttgaagaaccccaaattaataccatctggtccaggacatttgaaactatcacaatcccacactgctgctttaatttcttctaacaaaaaaggttt 702  Q
    |||||||| || |||| ||||||||||||||| || ||||| || || |||||||| ||||||||  ||||||||||||| || | || |||||||||    
T  222964 tctttgaaaaaacccagattaataccatctggaccgggacacttaaagctatcacagtcccacacaactgctttaatttcctccatcataaaaggttt 222867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 57236 - 56915
Alignment:
Q  21 acatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttgg 120  Q
    |||||||||||| |||||||||| ||||||||| ||||| ||| || |||||||| ||||||||||| || ||||| ||||||||||||||||| || ||    
T  57236 acatcatcacattaagaccttcaacagctaacaaaaacaaaaacggagaaagagggtccccttgacggaggcctctctcaaaatgaaactcatcagtcgg 57137  T
Q  121 acaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagacggaaaattcattttaatcatcacctcatct 220  Q
     |||||||| |||||||| ||||  |||||  | |||||||||||||||||| ||   | ||||  |  | ||||||||||||||  ||| |||||||||    
T  57136 gcaaccatttactaacactgatgtcgtagccattgtaacacactccataatcgaagtgcaccacagacgcagaaaattcattttagccattacctcatct 57037  T
Q  221 aagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttcattag 320  Q
    | ||| | ||||||||| || ||||| || ||||||||||| || ||||||||||||| |||||||| |||||||||||||| |||||||| |||||| |    
T  57036 aggtatctccaatccacggaatcatacgctttttcaaaatcaaccttaaacataagtaactctttattattacacttcgcattatctactaattcatttg 56937  T
Q  321 ctatcagaataccatctaaaat 342  Q
     ||||||||| ||||| |||||    
T  56936 ttatcagaatcccatccaaaat 56915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 710
Target Start/End: Complemental strand, 56911 - 56865
Alignment:
Q  664 ccacactgctgctttaatttcttctaacaaaaaaggtttgatgagat 710  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||    
T  56911 ccacaccgctgctttaatttcttccaacaaaaagggtttgatgagat 56865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 32926 - 33176
Alignment:
Q  20 gacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcggttg 119  Q
    |||||||| |||| |||||| || || || || |||||||| ||||| || |||||||||||||||||||| | ||| | ||||  ||||||||  || |    
T  32926 gacatcataacattaagaccctccgccgccaagagaaacaggaaaggagagagaggatccccttgacgaagacttctctaaaaaaaaaactcatttgtcg 33025  T
Q  120 gacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaactccacttagac-ggaaaattcattttaatcatcacctcat 218  Q
    | |  ||||| || ||||| || | ||| |  || || |||||||||||||||||| | | ||| | | || |||||||||||||||  |||||||||||    
T  33026 ggctcccattaaccaacaccgaagttgttgttgtcgtgacacactccataatccaagagcgcca-taacaccggaaaattcattttagacatcacctcat 33124  T
Q  219 ctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaa 270  Q
    | | ||||| |||||||||  | ||||| ||||| ||||| || ||||||||    
T  33125 caaggtaaccccaatccacataatcatacgccttctcaaagtctactttaaa 33176  T

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Target: scaffold0938 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0938
Description:

Target: scaffold0938; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 527
Target Start/End: Complemental strand, 3586 - 3489
Alignment:
Q  430 aattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaa 527  Q
    |||||||||||  ||||||||||| |  |  ||||||||||| ||||||| ||| |||||||| |||||| | ||||||||||| || | ||||||||    
T  3586 aattttataaaagctactcaccaaagagactggacgaaaatcagccacccattgcggactgtcgaccttttggatcaaagctataaaggtagaattaa 3489  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 20866 - 20963
Alignment:
Q  430 aattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaa 527  Q
    |||||||||||  ||||||||||| |  |  ||||||||||| ||||||| ||| |||||||| |||||| | ||||||||||| || | ||||||||    
T  20866 aattttataaaagctactcaccaaagagactggacgaaaatcagccacccattgcggactgtcgaccttttggatcaaagctataaaggtagaattaa 20963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 31034 - 31131
Alignment:
Q  430 aattttataaacactactcaccaaggctataggacgaaaatctgccacccgttgaggactgtctacctttggaatcaaagctatgaaagaagaattaa 527  Q
    |||||||||||  ||||||||||| |  |  ||||||||||| ||||||| ||| |||||||| |||||| | ||||||||||| || | ||||||||    
T  31034 aattttataaaagctactcaccaaagagactggacgaaaatcagccacccattgcggactgtcgaccttttggatcaaagctataaaggtagaattaa 31131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 666
Target Start/End: Complemental strand, 36140 - 36088
Alignment:
Q  614 aaccccaaattaataccatctggtccaggacatttgaaactatcacaatccca 666  Q
    ||||||| ||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  36140 aaccccatattaacaccatctggtccaggacttttaaaactgtcacaatccca 36088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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