View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0719_low_12 (Length: 403)
Name: NF0719_low_12
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_12 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0576 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (6 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Complemental strand, 31341558 - 31341183
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31341558 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
31341459 |
T |
|
| Q |
128 |
agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31341458 |
agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
31341359 |
T |
|
| Q |
228 |
aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
327 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31341358 |
aaagtaaagaacgactttgatatatctggaatagtagtgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
31341259 |
T |
|
| Q |
328 |
gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31341258 |
gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
31341183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Original strand, 7760 - 8135
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7760 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
7859 |
T |
|
| Q |
128 |
agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
227 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7860 |
agagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
7959 |
T |
|
| Q |
228 |
aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7960 |
aaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
8059 |
T |
|
| Q |
328 |
gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8060 |
gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
8135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Original strand, 15362989 - 15363364
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15362989 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
15363088 |
T |
|
| Q |
128 |
agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
227 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15363089 |
agagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
15363188 |
T |
|
| Q |
228 |
aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15363189 |
aaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
15363288 |
T |
|
| Q |
328 |
gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363289 |
gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
15363364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Complemental strand, 7406580 - 7406205
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406580 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
7406481 |
T |
|
| Q |
128 |
agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
227 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406480 |
agagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa |
7406381 |
T |
|
| Q |
228 |
aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406380 |
aaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt |
7406281 |
T |
|
| Q |
328 |
gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406280 |
gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
7406205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 7395009 - 7394920
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7395009 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaa |
7394920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 1655826 - 1655892
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655826 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatag |
1655892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 180 - 403
Target Start/End: Original strand, 17303497 - 17303718
Alignment:
| Q |
180 |
tcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaag-aacgactttgatatatctggactagtagtgtatctccaaatg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
17303497 |
tcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaaggaacgactttgatatatctggactagt---gtatctccaaacg |
17303593 |
T |
|
| Q |
279 |
ttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaaagatggacggaatcataaatattgttgaagctctccta |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17303594 |
ttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctccta |
17303693 |
T |
|
| Q |
379 |
atatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
17303694 |
atatttagtttaataattctaaaca |
17303718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 17303375 - 17303489
Alignment:
| Q |
28 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17303375 |
caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaaaaggaaaata |
17303474 |
T |
|
| Q |
128 |
agaaatcaagaaata |
142 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17303475 |
agaaatcaagaaata |
17303489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 269 - 399
Target Start/End: Original strand, 17242255 - 17242387
Alignment:
| Q |
269 |
tctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaa--agatggacggaatcataaatattgtt |
366 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
17242255 |
tctccaaacattgtagatattcaaactttagccctctgcaaaacagaggtgtatatcttgattatccaagaaagagatggacagtatcataaatattgcc |
17242354 |
T |
|
| Q |
367 |
gaagctctcctaatatttagtttaataattcta |
399 |
Q |
| |
|
|||||||| |||||| ||| || ||||||||| |
|
|
| T |
17242355 |
aaagctctcataatatctagattcataattcta |
17242387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 17242148 - 17242227
Alignment:
| Q |
161 |
attgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaagaacgact |
243 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
17242148 |
attgaaaagaaaaatagattcacaatccaatct---tcatgtcttaaaaacaaagcaataatcttaaaaagtaaagaacgact |
17242227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 17253170 - 17253244
Alignment:
| Q |
149 |
atcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaactta |
226 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||| |||||| |||| |
|
|
| T |
17253170 |
atcaatagaaatattgaaaataaaaatagattcacaatccaatct---gcatgtcataagaacaaatcccaaatctta |
17253244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 17253304 - 17253357
Alignment:
| Q |
350 |
gaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| || ||| ||||||||| |
|
|
| T |
17253304 |
gaatcataaatattgccgaagctctcctaatatctagattcatatttctaaaca |
17253357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 230 - 403
Target Start/End: Complemental strand, 4684861 - 4684688
Alignment:
| Q |
230 |
agtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttga |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684861 |
agtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttga |
4684762 |
T |
|
| Q |
330 |
ttatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
403 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684761 |
ttatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaaca |
4684688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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