View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0719_low_16 (Length: 341)
Name: NF0719_low_16
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_16 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0491 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 1440 - 1139
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1440 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1341 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1340 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1241 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1141 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1140 |
gt |
1139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 6327 - 6026
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6327 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
6228 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
6227 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
6128 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
6127 |
tatcgtgaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
6028 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
6027 |
gt |
6026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 18739561 - 18739260
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18739561 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18739462 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739461 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18739362 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739361 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
18739262 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
18739261 |
gt |
18739260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 18744525 - 18744224
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18744525 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18744426 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744425 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18744326 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744325 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
18744226 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
18744225 |
gt |
18744224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 18749486 - 18749185
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18749486 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18749387 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
18749386 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18749287 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
18749286 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
18749187 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
18749186 |
gt |
18749185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 18723834 - 18723533
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18723834 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18723735 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
18723734 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18723635 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
18723634 |
tatagtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
18723535 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
18723534 |
gt |
18723533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 18733045 - 18732996
Alignment:
| Q |
162 |
cttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaag |
211 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18733045 |
cttttgattagagttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 1604237 - 1604527
Alignment:
| Q |
31 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaag |
130 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1604237 |
agcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaag |
1604336 |
T |
|
| Q |
131 |
aaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagc |
230 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604337 |
aaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgacatattgtgaagc |
1604436 |
T |
|
| Q |
231 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604437 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1604527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 1088490 - 1088791
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1088490 |
gacattattaaagcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttg |
1088589 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1088590 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaaca |
1088689 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088690 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1088789 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1088790 |
gt |
1088791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 1541790 - 1541489
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
1541790 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttg |
1541691 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541690 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1541591 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1541590 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgtatgatgat |
1541491 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1541490 |
gt |
1541489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 1595896 - 1596197
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
1595896 |
gacataatcaaagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttg |
1595995 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1595996 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1596095 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1596096 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgat |
1596195 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1596196 |
gt |
1596197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 1105839 - 1106140
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1105839 |
gacataatcaaagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1105938 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1105939 |
ttgccttaaagaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1106038 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
1106039 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgtatgatgat |
1106138 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1106139 |
gt |
1106140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 1557734 - 1557433
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |||| |
|
|
| T |
1557734 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttg |
1557635 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1557634 |
ttgctttaaagaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaaca |
1557535 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557534 |
tatcgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1557435 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1557434 |
gt |
1557433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 1551024 - 1550723
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
1551024 |
gacattattaaagcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
1550925 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1550924 |
tcgccttaaagaaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgaca |
1550825 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
1550824 |
tattgtgaagcttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgtatgacgat |
1550725 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
1550724 |
gt |
1550723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 2329530 - 2329828
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| || |||| |
|
|
| T |
2329530 |
gacatcattaaagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2329629 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2329630 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggca |
2329729 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
318 |
Q |
| |
|
||| |||||||||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2329730 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatga |
2329828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 2321032 - 2321332
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||| | |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |||| |
|
|
| T |
2321032 |
gacatcattagagcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2321131 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| | ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2321132 |
ttgccttgaagaaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaa |
2321231 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
2321232 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgtatgatgat |
2321331 |
T |
|
| Q |
320 |
g |
320 |
Q |
| |
|
| |
|
|
| T |
2321332 |
g |
2321332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 2337429 - 2337727
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| || |||| || |||| |
|
|
| T |
2337429 |
gacattattaaagcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttg |
2337528 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2337529 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgaca |
2337628 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
318 |
Q |
| |
|
||| |||||||||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2337629 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatga |
2337727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 3955782 - 3955480
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||| |
|
|
| T |
3955782 |
gacatcattagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttg |
3955683 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||| |||| |||||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
3955682 |
ttgcactaaaaaaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
3955583 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | ||||||||||||||||| || ||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
3955582 |
tattgtgaagctttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgat |
3955483 |
T |
|
| Q |
320 |
gtc |
322 |
Q |
| |
|
||| |
|
|
| T |
3955482 |
gtc |
3955480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 9532375 - 9532075
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||| | || |||||||||| ||||||||||| | |||||||||||||||||||| |||||| | |||||| || ||| ||| |||| |
|
|
| T |
9532375 |
gacattattaaagcaatacaacactttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttg |
9532276 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||| | ||||||| ||| | | |
|
|
| T |
9532275 |
tcgccttaaagaaacttcacatctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaa |
9532176 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||| | |||||||||||| |
|
|
| T |
9532175 |
tattgttaagctttatggattatgattgtacaaaagaatcatgtttttgatctatcaatacgt-gagaaaggaagtttgttctcgtttttgtatgatgat |
9532077 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
9532076 |
gt |
9532075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 30792145 - 30792447
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||| || |||||||||| ||||||| ||| | ||| ||| | ||| |||||| |||||| | || ||| || ||||||| |||| |
|
|
| T |
30792145 |
gacattattaaagcaacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcatgtggcaaagttg |
30792244 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
30792245 |
ttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaa |
30792344 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
318 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| ||||||||||| |
|
|
| T |
30792345 |
tattgttaagctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatga |
30792444 |
T |
|
| Q |
319 |
tgt |
321 |
Q |
| |
|
||| |
|
|
| T |
30792445 |
tgt |
30792447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 19250247 - 19250547
Alignment:
| Q |
20 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttg |
119 |
Q |
| |
|
||||| || ||||||||| || |||||||||| ||||||||||| |||||| |||||| |||||| |||||| | | |||| || |||| || |||| |
|
|
| T |
19250247 |
gacattattaaagcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttg |
19250346 |
T |
|
| Q |
120 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
219 |
Q |
| |
|
| || ||||||||| ||||| |||||||| ||| || || |||||||||| |||||||||| ||||||||||||||||||| | ||||| ||| | | |
|
|
| T |
19250347 |
tcgctttaaagaaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaa |
19250446 |
T |
|
| Q |
220 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || |||||||||||| |
|
|
| T |
19250447 |
tattgttaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgatgat |
19250545 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
|
|
| T |
19250546 |
gt |
19250547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 42 - 315
Target Start/End: Complemental strand, 41669093 - 41668820
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || ||||||| ||| ||||||||||||||||| |
|
|
| T |
41669093 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
41668994 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
241 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||||| |||||||| |||||||| | |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
41668993 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggattt |
41668894 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
315 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
41668893 |
tgcttgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctcagttttgtatga |
41668820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 42 - 315
Target Start/End: Complemental strand, 42978019 - 42977746
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || ||||||| ||| ||||||||||||||||| |
|
|
| T |
42978019 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
42977920 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
241 |
Q |
| |
|
|||||||||||| || |||||||||||| | |||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
42977919 |
ctatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
42977820 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
42977819 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
42977746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 314
Target Start/End: Original strand, 54122784 - 54123056
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || ||||||| ||| ||||||||||||||||| |
|
|
| T |
54122784 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
54122883 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
241 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||||| || ||||||||||||||||| | |||||||||| | |||| | ||||||||| ||| |
|
|
| T |
54122884 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaagcagataaatatctttaagctttatatattt |
54122983 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatg |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || ||||||| |
|
|
| T |
54122984 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcagttttgtatg |
54123056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 303
Target Start/End: Complemental strand, 48712677 - 48712417
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || ||||||| ||| ||||||||||||||||| |
|
|
| T |
48712677 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
48712578 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
241 |
Q |
| |
|
|||| ||||||| || | |||||||||| | |||||||| ||||||||||||||||||| ||||||| || | ||||||| |||||||||||||| |
|
|
| T |
48712577 |
ctattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggattt |
48712479 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
303 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
48712478 |
tgcttgcacaaaagaatcatattttcaatctatcaatacatgaaaaaagaaagtttgttctc |
48712417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 16880134 - 16880331
Alignment:
| Q |
18 |
tggacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggt |
117 |
Q |
| |
|
||||||| || |||| |||| || |||||||||| ||||||||||| || ||| |||||||||||||||| |||||| | | |||| || | |||| || |
|
|
| T |
16880134 |
tggacattattaaagaaacacaacactttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccatcttgcaaagt |
16880233 |
T |
|
| Q |
118 |
tgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaa-gtgagaatattatcagaaataaagcac |
214 |
Q |
| |
|
|| |||||||||||| ||||| |||||||| | | || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16880234 |
tgccgccttaaagaaatttcacaactatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcac |
16880331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 303
Target Start/End: Original strand, 31657883 - 31658144
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||| |||||||||| |||||| | |||||| || ||||||| |||| ||||||||||||||||| |
|
|
| T |
31657883 |
actttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttcacaa |
31657982 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
241 |
Q |
| |
|
||| ||| ||| || |||||||||||| | |||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
31658082 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
303 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
31658083 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
31658144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 42 - 303
Target Start/End: Complemental strand, 8873340 - 8873078
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || ||||||| ||| ||||||||||||||||| |
|
|
| T |
8873340 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgcgaccttaaagaaacttcacaa |
8873241 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatgga-tt |
240 |
Q |
| |
|
|||||||||||| || |||| ||||||| |||||||||| ||||||||||||||||| | |||||||||| | ||||| | |||||||||||| || |
|
|
| T |
8873240 |
ctatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggattt |
8873141 |
T |
|
| Q |
241 |
ctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
303 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
8873140 |
ttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
8873078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 36620505 - 36620744
Alignment:
| Q |
73 |
agcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgat |
172 |
Q |
| |
|
||||||||||||| | |||||| | |||||| || ||||||| ||| ||||||||||||||||| |||| ||||||| || ||||||||||| |
|
|
| T |
36620505 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcg |
36620601 |
T |
|
| Q |
173 |
agtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatct |
272 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
36620602 |
agtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatct |
36620701 |
T |
|
| Q |
273 |
atcaatacatggagaaaggaagcttgttctctgtcttgtatga |
315 |
Q |
| |
|
||||||||||| | | || ||| |||||||| || |||||||| |
|
|
| T |
36620702 |
atcaatacatgaaaagagaaagtttgttctcggttttgtatga |
36620744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 315
Target Start/End: Complemental strand, 39102501 - 39102260
Alignment:
| Q |
73 |
agcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgat |
172 |
Q |
| |
|
||||||||||||| | |||||| | |||||| || ||||||| ||| |||||||||| |||||| |||| ||||||| || |||||||||||| |
|
|
| T |
39102501 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgcctccttaaagaa-cttcacaactattaagcagatgtgtcatcttttgatgcg |
39102403 |
T |
|
| Q |
173 |
agtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatct |
272 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||||| || | |
|
|
| T |
39102402 |
agttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaagcatgtttttaatat |
39102303 |
T |
|
| Q |
273 |
atcaatacatggagaaaggaagcttgttctctgtcttgtatga |
315 |
Q |
| |
|
||||||||||| | | || ||| |||||||| || |||||||| |
|
|
| T |
39102302 |
atcaatacatgaaaagagaaagtttgttctcggttttgtatga |
39102260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 42 - 315
Target Start/End: Original strand, 1257677 - 1257950
Alignment:
| Q |
42 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaacaagtggcaaggttgttgccttaaagaaacttcaccg |
141 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||| |||||| |||||| | |||||| || ||||| | ||| ||||||||||||||||| |
|
|
| T |
1257677 |
actttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtggccaatttgccaccttaaagaaacttcacaa |
1257776 |
T |
|
| Q |
142 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
241 |
Q |
| |
|
||||||||||| || ||| |||||||| |||||||||| ||||||||||||||||||| |||||||||| | ||||||| || ||||||| ||| |
|
|
| T |
1257777 |
atatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaaactttatgaattt |
1257876 |
T |
|
| Q |
242 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
315 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
1257877 |
tgtttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
1257950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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