View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_25 (Length: 298)
Name: NF0719_low_25
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 6915400 - 6915670
Alignment:
| Q |
1 |
caatccaagaatgaggagaaggttcggctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaa |
100 |
Q |
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| T |
6915400 |
caatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaagttggagcaaacgaagtttggtcagttaa |
6915499 |
T |
|
| Q |
101 |
catatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaaggttcctcgcttagttgagatgca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6915500 |
catatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaaggttcctcgcttagttcagatgca |
6915599 |
T |
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| Q |
201 |
ttctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
271 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915600 |
ttctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
6915670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 15044038 - 15043971
Alignment:
| Q |
43 |
gatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaacatatctaag |
110 |
Q |
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| T |
15044038 |
gatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggtcagctaacatatttaag |
15043971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 15041895 - 15041844
Alignment:
| Q |
220 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
271 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtg |
15041844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
108 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
170 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||| |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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