View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0719_low_26 (Length: 296)

Name: NF0719_low_26
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0719_low_26
NF0719_low_26
[»] scaffold0298 (1 HSPs)
scaffold0298 (85-204)||(274-393)
[»] scaffold0180 (1 HSPs)
scaffold0180 (85-204)||(10485-10604)
[»] chr8 (13 HSPs)
chr8 (85-204)||(38184956-38185075)
chr8 (95-204)||(20494554-20494663)
chr8 (110-197)||(22366099-22366186)
chr8 (110-204)||(21514393-21514487)
chr8 (110-196)||(4380865-4380951)
chr8 (110-204)||(22723274-22723368)
chr8 (110-178)||(18816551-18816619)
chr8 (85-138)||(18023600-18023653)
chr8 (137-204)||(24907917-24907986)
chr8 (167-204)||(18023647-18023684)
chr8 (110-159)||(24239756-24239805)
chr8 (85-117)||(4380661-4380693)
chr8 (85-117)||(18816339-18816371)
[»] chr3 (12 HSPs)
chr3 (85-204)||(2247910-2248029)
chr3 (110-204)||(24546902-24546996)
chr3 (110-204)||(24549207-24549301)
chr3 (115-204)||(25104036-25104125)
chr3 (110-196)||(17208234-17208320)
chr3 (110-196)||(14520156-14520242)
chr3 (110-159)||(17758665-17758714)
chr3 (110-159)||(19059985-19060034)
chr3 (110-159)||(40038987-40039036)
chr3 (85-117)||(29907615-29907647)
chr3 (85-117)||(29948781-29948813)
chr3 (85-117)||(29997935-29997967)
[»] chr4 (13 HSPs)
chr4 (85-197)||(17142918-17143030)
chr4 (85-204)||(15747817-15747935)
chr4 (110-204)||(2424643-2424737)
chr4 (110-204)||(14630839-14630933)
chr4 (110-204)||(26445909-26446003)
chr4 (110-200)||(10237326-10237416)
chr4 (153-204)||(16025917-16025968)
chr4 (110-159)||(15213681-15213730)
chr4 (110-159)||(54363351-54363400)
chr4 (85-117)||(25513827-25513859)
chr4 (85-119)||(9638984-9639018)
chr4 (110-159)||(19622239-19622288)
chr4 (85-117)||(14631111-14631143)
[»] chr7 (16 HSPs)
chr7 (85-204)||(34958234-34958353)
chr7 (85-204)||(831894-832012)
chr7 (85-204)||(1197074-1197192)
chr7 (110-204)||(4690917-4691011)
chr7 (110-204)||(47095154-47095248)
chr7 (110-204)||(18079554-18079648)
chr7 (110-204)||(43745358-43745452)
chr7 (113-205)||(20252446-20252538)
chr7 (110-196)||(15575905-15575991)
chr7 (115-196)||(18874922-18875003)
chr7 (110-153)||(48212984-48213027)
chr7 (110-151)||(19070012-19070053)
chr7 (141-203)||(19067535-19067597)
chr7 (85-116)||(20252226-20252257)
chr7 (127-204)||(3192149-3192227)
chr7 (110-159)||(16383825-16383874)
[»] chr5 (5 HSPs)
chr5 (110-204)||(18744583-18744677)
chr5 (110-204)||(1627324-1627418)
chr5 (110-197)||(660499-660586)
chr5 (110-196)||(23199463-23199549)
chr5 (85-117)||(6551334-6551366)
[»] chr1 (11 HSPs)
chr1 (117-204)||(20822732-20822819)
chr1 (110-204)||(28476990-28477084)
chr1 (110-204)||(20836536-20836630)
chr1 (110-196)||(24719766-24719852)
chr1 (110-167)||(12710623-12710680)
chr1 (85-119)||(8276033-8276067)
chr1 (110-156)||(41931308-41931354)
chr1 (85-117)||(22145710-22145742)
chr1 (85-117)||(28476778-28476810)
chr1 (85-117)||(38056716-38056748)
chr1 (85-117)||(50544848-50544880)
[»] scaffold1186 (2 HSPs)
scaffold1186 (110-204)||(1724-1818)
scaffold1186 (85-117)||(1996-2028)
[»] scaffold0056 (2 HSPs)
scaffold0056 (110-204)||(15880-15974)
scaffold0056 (85-117)||(18251-18283)
[»] scaffold0005 (2 HSPs)
scaffold0005 (110-204)||(186450-186544)
scaffold0005 (85-117)||(186240-186272)
[»] scaffold0516 (1 HSPs)
scaffold0516 (110-199)||(7578-7667)
[»] scaffold0878 (2 HSPs)
scaffold0878 (110-204)||(3678-3772)
scaffold0878 (85-117)||(3466-3498)
[»] chr2 (5 HSPs)
chr2 (110-196)||(21315734-21315820)
chr2 (110-204)||(29114465-29114559)
chr2 (110-196)||(21369002-21369088)
chr2 (110-196)||(21335524-21335610)
chr2 (112-170)||(23610356-23610414)
[»] scaffold0369 (1 HSPs)
scaffold0369 (111-204)||(15872-15965)
[»] scaffold0162 (1 HSPs)
scaffold0162 (110-196)||(24138-24224)
[»] chr6 (3 HSPs)
chr6 (110-196)||(20410766-20410852)
chr6 (110-204)||(17856515-17856610)
chr6 (85-117)||(18982548-18982580)
[»] scaffold0203 (1 HSPs)
scaffold0203 (110-196)||(18196-18284)
[»] scaffold0032 (1 HSPs)
scaffold0032 (110-196)||(62107-62195)
[»] scaffold0468 (1 HSPs)
scaffold0468 (110-204)||(11023-11118)
[»] scaffold0414 (1 HSPs)
scaffold0414 (110-196)||(11416-11504)
[»] scaffold0231 (2 HSPs)
scaffold0231 (110-155)||(17777-17822)
scaffold0231 (85-117)||(17565-17597)
[»] scaffold0183 (1 HSPs)
scaffold0183 (110-159)||(11120-11169)
[»] scaffold1204 (1 HSPs)
scaffold1204 (110-159)||(148-197)
[»] scaffold0452 (1 HSPs)
scaffold0452 (110-159)||(2843-2892)
[»] scaffold0058 (1 HSPs)
scaffold0058 (85-119)||(59699-59733)
[»] scaffold1256 (1 HSPs)
scaffold1256 (85-117)||(2244-2276)
[»] scaffold0676 (1 HSPs)
scaffold0676 (85-117)||(2857-2889)
[»] scaffold0371 (1 HSPs)
scaffold0371 (88-116)||(10492-10520)
[»] scaffold0017 (1 HSPs)
scaffold0017 (85-117)||(26703-26735)
[»] scaffold0007 (1 HSPs)
scaffold0007 (85-117)||(16463-16495)


Alignment Details
Target: scaffold0298 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 393 - 274
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  393 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaag 294  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  293 tataatgttgttgttgatga 274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 10604 - 10485
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  10604 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggcgaag 10505  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  10504 tataatgttgttgttgatga 10485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 38184956 - 38185075
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38184956 attctgaaaaagggtttaacattgtagttattgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaag 38185055  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  38185056 tataatgttgttgttgatga 38185075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 20494554 - 20494663
Alignment:
Q  95 agggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttg 194  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  20494554 agggtttaacattgtagttgttgatgataaatttacatgctcaagttatgtatatatgtaaacttgtgtttttgctcaaaattggtgaagtataatattg 20494653  T
Q  195 ttgttgatga 204  Q
    ||||||||||    
T  20494654 ttgttgatga 20494663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 22366186 - 22366099
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22366186 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttg 22366099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 21514487 - 21514393
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  21514487 agttgttgatgatgaaattatatgctcaagttatgtatatatgtatacttgtgttttttctcaaaattggtgaagtataatgttgttgttgatga 21514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 4380865 - 4380951
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  4380865 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattcgtgaagtattatgttgtt 4380951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 22723368 - 22723274
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||  |||| ||||||||||    
T  22723368 agttgttgatgatgaatttacatgcttaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtattttgttattgttgatga 22723274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 18816551 - 18816619
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattg 178  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18816551 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattg 18816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 18023600 - 18023653
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18023600 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaa 18023653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 24907986 - 24907917
Alignment:
Q  137 aagttatgtatatatgt--atacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||  |||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  24907986 aagttatgtatatatgtgtatacttgtgttttttctcaaaattgatgaagtataatgttgttgttgatga 24907917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 18023647 - 18023684
Alignment:
Q  167 tgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  18023647 tgctcaaaattggtgaagtataatgttgttgttgatga 18023684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 24239805 - 24239756
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||| ||||||||||| ||||||||||||  ||||| |||||||||||||    
T  24239805 agttcttgatgatgaaattacatgctcaatatatgtttatatgtatactt 24239756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 4380661 - 4380693
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  4380661 attctgaaaaagggtttaaccttgtagttgttg 4380693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 18816339 - 18816371
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  18816339 attctgaaaaagggtttaaccttgtagttgttg 18816371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 2247910 - 2248029
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||    
T  2247910 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgcatacttatgtttttgctcaaaattggtgaag 2248009  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  2248010 tataatgttgttgttgatga 2248029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 24546996 - 24546902
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  24546996 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtattgttgcccaaaattggtgaagtataatgttgttgttgatga 24546902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 24549207 - 24549301
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  24549207 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtattcttgcccaaaattggtgaagtataatgttgttgttgatga 24549301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 25104036 - 25104125
Alignment:
Q  115 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||    
T  25104036 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattgatgaactataatgttgttgttgatga 25104125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 17208320 - 17208234
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  17208320 agttgttgatgatgattttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 17208234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 14520242 - 14520156
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  14520242 agttgttgatgatgaatttatatgcttaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaaatatgatgttgtt 14520156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 17758665 - 17758714
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  17758665 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 17758714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 19059985 - 19060034
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  19059985 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 19060034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 40038987 - 40039036
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||| ||||  ||||| |||||||||||||    
T  40038987 agttgttgatgatgaaattacatgttcaatatatgtttatatgtatactt 40039036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 29907647 - 29907615
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  29907647 attctgaaaaagggtttaaccttgtagttgttg 29907615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 29948813 - 29948781
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  29948813 attctgaaaaagggtttaaccttgtagttgttg 29948781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 29997967 - 29997935
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  29997967 attctgaaaaagggtttaaccttgtagttgttg 29997935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 17143030 - 17142918
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17143030 attctgaaaaggggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaag 17142931  T
Q  185 tataatgttgttg 197  Q
    |||||||||||||    
T  17142930 tataatgttgttg 17142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 15747817 - 15747935
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  15747817 attctgaaaaagggtttaacattgtagttgttgatgatgaatatacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaattggtgaag 15747915  T
Q  185 tataatgttgttgttgatga 204  Q
    |||||||||| |||||||||    
T  15747916 tataatgttgatgttgatga 15747935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 2424643 - 2424737
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2424643 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 2424737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 14630933 - 14630839
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  14630933 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 14630839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 26446003 - 26445909
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26446003 agttgttgatgatgaatttatattctcaagttatgtatataagtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 26445909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 10237326 - 10237416
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttg 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  10237326 agttgttgatgaagaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttattgttg 10237416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 16025917 - 16025968
Alignment:
Q  153 tatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16025917 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 16025968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 15213681 - 15213730
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  15213681 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 15213730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 54363351 - 54363400
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  54363351 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 54363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 25513859 - 25513827
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||||||||||||||||    
T  25513859 attctgaaaaagggtttaacattgtagttgttg 25513827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 9639018 - 9638984
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgat 119  Q
    |||||||||||||||||||| ||||||||||||||    
T  9639018 attctgaaaaagggtttaaccttgtagttgttgat 9638984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 19622239 - 19622288
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    ||||||| |||||||| ||||||||||||  ||||| |||||||||||||    
T  19622239 agttgttaatgatgaaattacatgctcaatatatgtttatatgtatactt 19622288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 14631143 - 14631111
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  14631143 attctgaaaaagggtttaaccttgtagttgttg 14631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 34958353 - 34958234
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||    
T  34958353 attctgaaaaaggatttaacattgtagttgttgatgatgaatttacatgctcaagttagatatatatgtatacttgtgtttttgctcaaaattggtgaag 34958254  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  34958253 tataatgttgttgttgatga 34958234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 831894 - 832012
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||    
T  831894 attctaaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaatgggtgaag 831992  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  831993 tataatgttgttgttgatga 832012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 1197074 - 1197192
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggag 184  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||    
T  1197074 attctaaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtg-ttttgctcaaaatgggtgaag 1197172  T
Q  185 tataatgttgttgttgatga 204  Q
    ||||||||||||||||||||    
T  1197173 tataatgttgttgttgatga 1197192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 4690917 - 4691011
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  4690917 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattggtgaagtataatgttgttgttgatga 4691011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 47095248 - 47095154
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47095248 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 47095154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 18079554 - 18079648
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  18079554 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaaatataatgttattgttgatga 18079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 43745452 - 43745358
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  43745452 agttgttgatgatgaatttatatggtcaagttatgtatatatgtatacttgagtttttgctcaaaattggtgaagtataatgttgttgttgatga 43745358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 20252446 - 20252538
Alignment:
Q  113 tgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatgat 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||    
T  20252446 tgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgttttttatgat 20252538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 15575905 - 15575991
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  15575905 agttgttgatgatgaatttatctgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattcgtgaagtatgatgttgtt 15575991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 18874922 - 18875003
Alignment:
Q  115 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  18874922 ttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattggtgaagtatgatgttgtt 18875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 48212984 - 48213027
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgt 153  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  48212984 agttgttgatgatgaatttatatgctcaagttatatatatatgt 48213027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 19070053 - 19070012
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatat 151  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  19070053 agttgttgatgatgaaattacatgctcaagttatatatatat 19070012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 19067597 - 19067535
Alignment:
Q  141 tatgtatatatgtatacttgtgt-ttttgctcaaaattggtggagtataatgttgttgttgatg 203  Q
    ||||||| ||||||||||| ||| ||||||||||| ||||| |||||| |||||||||||||||    
T  19067597 tatgtatgtatgtatactt-tgtgttttgctcaaatttggttgagtatgatgttgttgttgatg 19067535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 20252226 - 20252257
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgtt 116  Q
    ||||||||||||||||||||||||||||||||    
T  20252226 attctgaaaaagggtttaacattgtagttgtt 20252257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 3192149 - 3192227
Alignment:
Q  127 ttacatgctcaagttatgtatatatgtatac-ttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||| | ||| ||||||||||| |||||||||   ||||||||| || |  |||||||||||||||||||    
T  3192149 ttacatgctcaagatgtgtgtatatgtatactttgtgttttcattcaaaattgatgaaaaataatgttgttgttgatga 3192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 16383874 - 16383825
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||| | |||||||||||||    
T  16383874 agttgttgatgatgaaattacatgctcaatatatttttatatgtatactt 16383825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 18744677 - 18744583
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18744677 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 18744583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 1627324 - 1627418
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  1627324 agttgttgatgatgaatttatatgctcaagttatctatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttgttgttgatga 1627418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 660586 - 660499
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttg 197  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  660586 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttgttg 660499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 23199463 - 23199549
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||||||||    
T  23199463 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgcatttttgctcaaaattggtgaagtatgatgttgtt 23199549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 6551334 - 6551366
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  6551334 attctgaaaaagggtttaaccttgtagttgttg 6551366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 20822819 - 20822732
Alignment:
Q  117 gatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20822819 gatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 20822732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 28476990 - 28477084
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28476990 agttgttgatgatgaatttatatgctcaagttatgtatatatgtataattgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 28477084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 20836630 - 20836536
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||    
T  20836630 agttcttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtagaatgtggttgtttatga 20836536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 24719766 - 24719852
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  24719766 agttgttgatgatgaatttatatgttcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 24719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 12710680 - 12710623
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgttttt 167  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  12710680 agttgttgatgatgaatttacatattcaagttatgtatatatgtatacttgtgttttt 12710623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 8276033 - 8276067
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgat 119  Q
    |||||||||||||||||||| ||||||||||||||    
T  8276033 attctgaaaaagggtttaaccttgtagttgttgat 8276067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 41931308 - 41931354
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtata 156  Q
    |||||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  41931308 agttgttgatgatgaaattacatgttcaagttatatatatatatata 41931354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 22145710 - 22145742
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  22145710 attctgaaaaagggtttaaccttgtagttgttg 22145742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 28476778 - 28476810
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  28476778 attctgaaaaagggtttaaccttgtagttgttg 28476810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 38056716 - 38056748
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  38056716 attctgaaaaagggtttaaccttgtagttgttg 38056748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 50544880 - 50544848
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  50544880 attctgaaaaagggtttaaccttgtagttgttg 50544848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 1818 - 1724
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1818 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 2028 - 1996
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  2028 attctgaaaaagggtttaaccttgtagttgttg 1996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 15974 - 15880
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||    
T  15974 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttactcaaaattgatgaagtataatattgttgttgatga 15880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 18283 - 18251
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  18283 attctgaaaaagggtttaaccttgtagttgttg 18251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 186450 - 186544
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  186450 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 186544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 186240 - 186272
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  186240 attctgaaaaagggtttaaccttgtagttgttg 186272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 7578 - 7667
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgtt 199  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7578 agttgttgatgatgaatttacatgttcaagttatgtgtatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 3678 - 3772
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  3678 agttgttgaagatgaatttacatgcttaagttatgtatatatgtatacttgtgtttttgcttaaaattggtgaactataatgttgttgttgatga 3772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 3466 - 3498
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  3466 attctgaaaaagggtttaaccttgtagttgttg 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 21315734 - 21315820
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  21315734 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 21315820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 29114559 - 29114465
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||    
T  29114559 agttgttgatgatgaatttacatgctcaagttatgtataaatgtatacttgtgtttttactcaaaattggtgaaatataatgttattgttgatga 29114465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 21369088 - 21369002
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  21369088 agttgttgttgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 21369002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 21335524 - 21335610
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  21335524 agttgttgatgatgaatttatatgctcaagttatgtatatatatatacttgtgtttttgcacaaaattggtgaagtatgatgttgtt 21335610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 23610414 - 23610356
Alignment:
Q  112 ttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgct 170  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23610414 ttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgct 23610356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 15872 - 15965
Alignment:
Q  111 gttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||| ||||||||||    
T  15872 gttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttacttaaaattggtgaagtataacgttattgttgatga 15965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 24138 - 24224
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  24138 agttcttgatgatgaattcatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 24224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 20410766 - 20410852
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||    
T  20410766 agttgttgatgatgaatttatatgctcgagttatgtatataagtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 20410852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 17856515 - 17856610
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatac-ttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| | | ||||||| || |  || ||||||||||||||||    
T  17856515 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactttgtgttttcgtttaaaattgatgaaaaattatgttgttgttgatga 17856610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 18982580 - 18982548
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  18982580 attctgaaaaagggtttaaccttgtagttgttg 18982548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 18196 - 18284
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtata--tatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  18196 agttgttgatgatgaatttatatgctcaagttatgtatatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 18284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 62107 - 62195
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtata--tatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  62107 agttgttgatgatgaatttatatgctcaagttatgtatatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 62195  T

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Target: scaffold0468 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 11023 - 11118
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatac-ttgtgtttttgctcaaaattggtggagtataatgttgttgttgatga 204  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||  |||||||||| || | ||||||||||||||||||||    
T  11023 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactttgtgttttcactcaaaattgatgaaatataatgttgttgttgatga 11118  T

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Target: scaffold0414 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 11416 - 11504
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatg--tatatatgtatacttgtgtttttgctcaaaattggtggagtataatgttgtt 196  Q
    |||||||||||||||| ||| ||| ||||||||||  ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||    
T  11416 agttgttgatgatgaacttatatgttcaagttatgcatatatatgtatacttgtatttttgctcaaaattggtcaagtatgatgttgtt 11504  T

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Target: scaffold0231 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 17777 - 17822
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtat 155  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  17777 agttgttgatgatgaatttatatgctcaagttatgtatatatgtat 17822  T

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Target: scaffold0231; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 17565 - 17597
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  17565 attctgaaaaagggtttaaccttgtagttgttg 17597  T

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Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 11169 - 11120
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  11169 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactt 11120  T

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Target: scaffold1204 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 148 - 197
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  148 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 197  T

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Target: scaffold0452 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 2843 - 2892
Alignment:
Q  110 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 159  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  2843 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 2892  T

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Target: scaffold0058 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 59699 - 59733
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttgat 119  Q
    |||||||||||||||||||| ||||||||||||||    
T  59699 attctgaaaaagggtttaactttgtagttgttgat 59733  T

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Target: scaffold1256 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 2244 - 2276
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  2244 attctgaaaaagggtttaaccttgtagttgttg 2276  T

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Target: scaffold0676 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 2889 - 2857
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  2889 attctgaaaaagggtttaaccttgtagttgttg 2857  T

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Target: scaffold0371 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 10492 - 10520
Alignment:
Q  88 ctgaaaaagggtttaacattgtagttgtt 116  Q
    |||||||||||||||||||||||||||||    
T  10492 ctgaaaaagggtttaacattgtagttgtt 10520  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 26735 - 26703
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  26735 attctgaaaaagggtttaactttgtagttgttg 26703  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 16463 - 16495
Alignment:
Q  85 attctgaaaaagggtttaacattgtagttgttg 117  Q
    |||||||||||||||||||| ||||||||||||    
T  16463 attctgaaaaagggtttaaccttgtagttgttg 16495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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