View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_29 (Length: 286)
Name: NF0719_low_29
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 32062605 - 32062873
Alignment:
| Q |
1 |
caatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcacc |
100 |
Q |
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| T |
32062605 |
caatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcacc |
32062704 |
T |
|
| Q |
101 |
ggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaacgtcctccactacc-aaatcgcgaggaaag |
199 |
Q |
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| T |
32062705 |
ggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaag |
32062804 |
T |
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| Q |
200 |
tcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
268 |
Q |
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| T |
32062805 |
tcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
32062873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 32062551 - 32062623
Alignment:
| Q |
82 |
tgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatga |
154 |
Q |
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| T |
32062551 |
tgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttttcaatccttgccgatgatga |
32062623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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