View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0719_low_3 (Length: 561)

Name: NF0719_low_3
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0719_low_3
NF0719_low_3
[»] chr6 (8 HSPs)
chr6 (1-375)||(31278229-31278595)
chr6 (460-561)||(31278043-31278144)
chr6 (472-520)||(10750988-10751036)
chr6 (472-520)||(34636986-34637034)
chr6 (472-520)||(26182052-26182100)
chr6 (472-516)||(32449629-32449673)
chr6 (472-527)||(20559593-20559648)
chr6 (467-518)||(24164586-24164637)
[»] chr1 (10 HSPs)
chr1 (192-280)||(31461595-31461683)
chr1 (177-277)||(31473123-31473224)
chr1 (472-532)||(8422356-8422416)
chr1 (472-520)||(37666538-37666586)
chr1 (1-54)||(10644771-10644824)
chr1 (472-524)||(6836694-6836746)
chr1 (472-520)||(43406726-43406774)
chr1 (1-36)||(31472958-31472993)
chr1 (460-489)||(25922535-25922564)
chr1 (472-520)||(338907-338955)
[»] scaffold0036 (1 HSPs)
scaffold0036 (468-527)||(110196-110254)
[»] chr4 (8 HSPs)
chr4 (1-124)||(18541963-18542082)
chr4 (485-549)||(2761422-2761486)
chr4 (476-528)||(34828117-34828169)
chr4 (472-520)||(40459750-40459798)
chr4 (472-520)||(49499855-49499903)
chr4 (472-532)||(55162991-55163051)
chr4 (192-280)||(18542165-18542252)
chr4 (472-520)||(28968597-28968645)
[»] chr3 (10 HSPs)
chr3 (177-279)||(31516923-31517025)
chr3 (8-117)||(31516756-31516865)
chr3 (472-520)||(16976117-16976165)
chr3 (472-520)||(46403959-46404007)
chr3 (472-520)||(5004088-5004136)
chr3 (472-520)||(7336051-7336099)
chr3 (1-121)||(36598497-36598617)
chr3 (472-527)||(11937241-11937295)
chr3 (479-532)||(9013621-9013674)
chr3 (472-528)||(43277393-43277449)
[»] chr7 (8 HSPs)
chr7 (464-519)||(1322280-1322334)
chr7 (472-520)||(10288150-10288198)
chr7 (472-527)||(21490841-21490895)
chr7 (468-527)||(43657449-43657507)
chr7 (471-528)||(9994121-9994178)
chr7 (472-520)||(11035742-11035790)
chr7 (472-520)||(15873335-15873383)
chr7 (472-520)||(22078427-22078475)
[»] chr5 (7 HSPs)
chr5 (472-520)||(537619-537667)
chr5 (1-55)||(14538853-14538907)
chr5 (472-520)||(6309495-6309543)
chr5 (464-504)||(25674176-25674216)
chr5 (472-548)||(28201902-28201978)
chr5 (472-520)||(42862173-42862221)
chr5 (472-548)||(30910558-30910634)
[»] chr2 (9 HSPs)
chr2 (472-520)||(18292102-18292150)
chr2 (472-527)||(14491348-14491402)
chr2 (474-528)||(12773784-12773838)
chr2 (479-517)||(27976395-27976433)
chr2 (479-517)||(28062923-28062961)
chr2 (472-510)||(34397224-34397262)
chr2 (467-527)||(29271378-29271438)
chr2 (472-520)||(35670126-35670174)
chr2 (472-520)||(40448280-40448328)
[»] chr8 (5 HSPs)
chr8 (468-511)||(26162354-26162397)
chr8 (472-520)||(44436901-44436949)
chr8 (480-518)||(21231113-21231151)
chr8 (472-520)||(6150319-6150367)
chr8 (472-520)||(41957818-41957866)
[»] scaffold0657 (1 HSPs)
scaffold0657 (472-520)||(1697-1745)
[»] scaffold0413 (1 HSPs)
scaffold0413 (472-520)||(231-279)
[»] scaffold0054 (1 HSPs)
scaffold0054 (472-541)||(32101-32170)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 6e-94; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 31278595 - 31278229
Alignment:
1 tcatcaccaagataggagacgaaggatttgacacccttaatgtgtttttccgattctgcttttgcgattatgtagagttttcatttatgagatattgtgt 100  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||              |||||||||||||||| ||| ||||||    
31278595 tcatcaccaagatatgagacgaaggatttggcacccttaatgtgtttttcccattccgc--------------agagttttcatttatgtgatgttgtgt 31278510  T
101 tttagtttgctaaagttttgtgttacta----aacccctcttttacattggcgtgagaccttttgataatnnnnnnnnntgtttaaaggcttctaggctg 196  Q
    |||||||||||||||||||||||| |||    ||||||||||||||||||| |||| |||||||||||||         ||||||||||||||||| |||    
31278509 tttagtttgctaaagttttgtgttgctatacaaacccctcttttacattggtgtgaaaccttttgataataaaaaaaaatgtttaaaggcttctagactg 31278410  T
197 aagctttgatgccgctgacattatggccctttcggtacatttgttatacagacccccttaaaaagtatgtattgatatatacactacatgtattattttt 296  Q
    |||||||||| ||||||||||||  ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||    
31278409 aagctttgataccgctgacattagtgcccttttggtacatctgctatacagacccccttaaaaagtatgtattgatatatatactccatgtatttttttt 31278310  T
297 t--ggctccttataggcattggccctgggccgtcgcagggccaatgccttaggccggccctgaatggtttatttaacctaa 375  Q
    |  |||  ||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
31278309 ttgggccacttataggcatgggccttaggccgtcgcagggccaatgccttaggctggccctgaatgatttatttaacctaa 31278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 460 - 561
Target Start/End: Complemental strand, 31278144 - 31278043
Alignment:
460 atgaaagttgaccccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttacttaatgcgcgtatgaggacaaatttgagg 559  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
31278144 atgaaagttgaccccttacaccagcattttaagtgccaaagaagagatgatgtttgctttggtgtttttacttgatgcgcgtacgaggacaaatttgagg 31278045  T
560 tt 561  Q
    ||    
31278044 tt 31278043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 10751036 - 10750988
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
10751036 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 10750988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 34636986 - 34637034
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
34636986 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 34637034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 26182100 - 26182052
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||    
26182100 cccttacactaacattttaggtaccaaagaagagatggtctatgctttg 26182052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 516
Target Start/End: Complemental strand, 32449673 - 32449629
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgc 516  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||    
32449673 cccttacactaacattttaggtaccaaagaagagatgatctatgc 32449629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 20559593 - 20559648
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    ||||||||  ||||||||||||  ||||||||| ||| ||||||||||||||||||    
20559593 cccttacagtaacattttaggtatcaaagaagacatggtgtatgctttggtgtttt 20559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 24164586 - 24164637
Alignment:
467 ttgaccccttacaccaacattttaggtgccaaagaagagatgatgtatgctt 518  Q
    ||||||||||||||||||||||||||| ||||| |||| ||  |||||||||    
24164586 ttgaccccttacaccaacattttaggtaccaaataagacatagtgtatgctt 24164637  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 31461595 - 31461683
Alignment:
192 ggctgaagctttgatgccgctgacattatggccctttcggtacatttgttatacagacccccttaaaaagtatgtattgatatatacac 280  Q
    ||||||||||||||| | | ||||||||||||||||| ||| |||||| ||||||||||| ||||||||| | ||||||||||||||||    
31461595 ggctgaagctttgatactgttgacattatggcccttttggtgcatttgctatacagaccctcttaaaaagaaggtattgatatatacac 31461683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 31473123 - 31473224
Alignment:
177 gtttaaaggcttctaggctgaagctttgatgccgctgacattatggccctttcggtacatttgttatacagac-ccccttaaaaagtatgtattgatata 275  Q
    |||| ||||||  ||||||||||||||||| | | | ||||||  ||||||| ||||||||||  |||||||| |||||||||||| |||||||||| ||    
31473123 gtttgaaggctgttaggctgaagctttgatactgttaacattagagcccttttggtacatttgcaatacagacaccccttaaaaagaatgtattgatcta 31473222  T
276 ta 277  Q
    ||    
31473223 ta 31473224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 8422356 - 8422416
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttactt 532  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||  ||||||||||    
8422356 cccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttactt 8422416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 37666586 - 37666538
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
37666586 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 37666538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10644771 - 10644824
Alignment:
1 tcatcaccaagataggagacgaaggatttgacacccttaatgtgtttttccgat 54  Q
    ||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||    
10644771 tcatcaccaagattggagacaaagaatttggcacccttgatgtgtttttccgat 10644824  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 6836694 - 6836746
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgt 524  Q
    ||||||||| |||||||||||| |||||||||  ||| |||||||||||||||    
6836694 cccttacactaacattttaggtaccaaagaaggaatggtgtatgctttggtgt 6836746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 43406774 - 43406726
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||| ||| |||||||||||| |||||||||||||||| |||||||||    
43406774 cccttgcactaacattttaggtaccaaagaagagatgatctatgctttg 43406726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31472958 - 31472993
Alignment:
1 tcatcaccaagataggagacgaaggatttgacaccc 36  Q
    ||||||||||||| ||||||||||||||||||||||    
31472958 tcatcaccaagattggagacgaaggatttgacaccc 31472993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 489
Target Start/End: Original strand, 25922535 - 25922564
Alignment:
460 atgaaagttgaccccttacaccaacatttt 489  Q
    ||||||||||||||||||||||||||||||    
25922535 atgaaagttgaccccttacaccaacatttt 25922564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 338907 - 338955
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||| |||||    
338907 cccttgcactaacattttaggtaccaaagaagagatgatctatactttg 338955  T

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Target: scaffold0036 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 110196 - 110254
Alignment:
468 tgaccccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||    
110196 tgaccccttacaccaacattttaggtaccaaa-aagagatgatgtttgctttggtgtttt 110254  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 18541963 - 18542082
Alignment:
1 tcatcaccaagataggagacgaaggatttgacacccttaatgtgtttttccgattctgcttttgcgattatgtagagttttcatttatgagatattgtgt 100  Q
    ||||||||||||| ||||| |||||||||| ||||||| |||| ||||| ||||    | |||||| || |||||||||||||||||||  || | |||     
18541963 tcatcaccaagattggagatgaaggatttggcacccttgatgtcttttttcgat----cgtttgcgtttctgtagagttttcatttatgttatgtcgtga 18542058  T
101 tttagtttgctaaagttttgtgtt 124  Q
    ||||||||| ||||| ||||||||    
18542059 tttagtttgttaaagctttgtgtt 18542082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 549
Target Start/End: Complemental strand, 2761486 - 2761422
Alignment:
485 attttaggtgccaaagaagagatgatgtatgctttggtgtttttacttaatgcgcgtatgaggac 549  Q
    |||||||||  ||||||||| ||| ||||||||||||||||||| ||| | ||||||| ||||||    
2761486 attttaggtatcaaagaagacatggtgtatgctttggtgtttttgcttgaagcgcgtacgaggac 2761422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 34828169 - 34828117
Alignment:
476 tacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgttttt 528  Q
    |||||||||||||||||| ||||| |||| ||| ||||||||||| |||||||    
34828169 tacaccaacattttaggtaccaaaaaagacatggtgtatgctttgatgttttt 34828117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 40459750 - 40459798
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||| ||| |||||||||||| |||||||||||||||| |||||||||    
40459750 cccttgcactaacattttaggtaccaaagaagagatgatctatgctttg 40459798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 49499855 - 49499903
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||||    
49499855 cccttacactaacattttaggtgctaaagaagagatggtctatgctttg 49499903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 55162991 - 55163051
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttactt 532  Q
    ||||||||| |||||||||||  |||||||||||||| | |||||||||  ||||||||||    
55162991 cccttacactaacattttaggcaccaaagaagagatggtctatgctttgaagtttttactt 55163051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 18542165 - 18542252
Alignment:
192 ggctgaagctttgatgccgctgacattatggccctttcggtacatttgttatacagacccccttaaaaagtatgtattgatatatacac 280  Q
    ||||||| |||||||   |||||||||  || ||||| |||||| ||| |||||||| |||||| ||||| | ||||||||||||||||    
18542165 ggctgaaactttgataatgctgacattggggtccttttggtacaattgctatacaga-ccccttcaaaagcacgtattgatatatacac 18542252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 28968645 - 28968597
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||| ||||| | |||||||||    
28968645 cccttacactaacattttaggtaccaaagaaaagatggtctatgctttg 28968597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 31516923 - 31517025
Alignment:
177 gtttaaaggcttctaggctgaagctttgatgccgctgacattatggccctttcggtacatttgttatacagacccccttaaaaagtatgtattgatatat 276  Q
    ||||||||||| || ||||||||||||| | ||| |||||||| || ||||| ||| || ||| |||| |||||||||||| ||| | ||||||||||||    
31516923 gtttaaaggctactgggctgaagctttggtaccgttgacattaggggccttttggtgcaattgctataaagacccccttaataagcacgtattgatatat 31517022  T
277 aca 279  Q
    |||    
31517023 aca 31517025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 31516756 - 31516865
Alignment:
8 caagataggagacgaaggatttgacacccttaatgtgtttttccgattctgcttttgcgattatgtagagttttcatttatgagatattgtgttttagtt 107  Q
    |||||| |||||||||| |||||| || ||| |||||||||||| ||| ||| | |||| || |||||||||||  ||| ||  || |||||||||||||    
31516756 caagattggagacgaagaatttgatactcttgatgtgtttttccaattttgcatctgcgtttctgtagagtttttgtttctgttatgttgtgttttagtt 31516855  T
108 tgctaaagtt 117  Q
    || |||||||    
31516856 tgttaaagtt 31516865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 16976117 - 16976165
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
16976117 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 16976165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 46404007 - 46403959
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
46404007 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 46403959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 5004136 - 5004088
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| ||||| |||||||||| |||||||||    
5004136 cccttacactaacattttaggtaccaaataagagatgatctatgctttg 5004088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 7336099 - 7336051
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| ||||||||||||  ||||||||||||||| |||||||||    
7336099 cccttacactaacattttaggtaacaaagaagagatgatttatgctttg 7336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 36598617 - 36598497
Alignment:
1 tcatcaccaagataggagacgaaggatttgacacccttaatgtgtttttccgattctgcttttgcgattatgtagagttttcatttatgagatattgtgt 100  Q
    ||||||||||||| |||||||||| ||| | |||| || ||||||||||| |||| ||  ||||||||| || |   ||||  ||| ||  || ||||||    
36598617 tcatcaccaagattggagacgaagaattggtcaccattgatgtgtttttctgattttgtgtttgcgattttgcaatttttttgtttctgttatgttgtgt 36598518  T
101 tttagtttgctaaagttttgt 121  Q
    ||||||||||||| |||||||    
36598517 tttagtttgctaaggttttgt 36598497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 11937295 - 11937241
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    ||||||||| || ||||||||| |||||||||| ||| ||||||||||||||||||    
11937295 cccttacactaatattttaggtaccaaagaagacatg-tgtatgctttggtgtttt 11937241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 9013674 - 9013621
Alignment:
479 accaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttactt 532  Q
    ||||||||||||||| |||||||| | ||||||||||  ||| |||||||||||    
9013674 accaacattttaggtaccaaagaacatatgatgtatgtcttgatgtttttactt 9013621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 43277449 - 43277393
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgttttt 528  Q
    ||||||||| || ||||||||| | |||||||||||| | ||| |||||||||||||    
43277449 cccttacactaatattttaggtactaaagaagagatggtctatactttggtgttttt 43277393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 519
Target Start/End: Complemental strand, 1322334 - 1322280
Alignment:
464 aagttgaccccttacaccaacattttaggtgccaaagaagagatgatgtatgcttt 519  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
1322334 aagttgaccccttacaccaacattttaggtaccaaagaagacatg-tgtatgcttt 1322280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 10288198 - 10288150
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
10288198 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 10288150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 21490895 - 21490841
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    ||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||    
21490895 cccttacactaacattttaggtaccaaagaagacatg-tgtatgctttggtgtttt 21490841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 43657449 - 43657507
Alignment:
468 tgaccccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||| | |||||||||    
43657449 tgacctcttacaccaacattttaggtg-caaaaaagagatgatgtatgttgtggtgtttt 43657507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 9994121 - 9994178
Alignment:
471 ccccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgttttt 528  Q
    ||||| |||| ||||||||||||  ||||||||| ||| |||||||||||||||||||    
9994121 cccctaacactaacattttaggtatcaaagaagacatggtgtatgctttggtgttttt 9994178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 11035790 - 11035742
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||    
11035790 cccttacactaacattttaggtaccaaagaagagatggtctatgctttg 11035742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 15873383 - 15873335
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||| ||| |||||||||||| |||||||||||||||| |||||||||    
15873383 cccttgcactaacattttaggtaccaaagaagagatgatctatgctttg 15873335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 22078427 - 22078475
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| || ||||||||| |||||||||||||| | |||||||||    
22078427 cccttacactaatattttaggtaccaaagaagagatggtctatgctttg 22078475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 537619 - 537667
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
537619 cccttacactaacattttaggtaccaaagaagagatgatctatgctttg 537667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14538907 - 14538853
Alignment:
1 tcatcaccaagataggagacgaaggatttgacacccttaatgtgtttttccgatt 55  Q
    ||||||||||||||||||  ||||||| |||||||||| |||| |||||||||||    
14538907 tcatcaccaagataggaggggaaggatctgacacccttgatgtatttttccgatt 14538853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 6309495 - 6309543
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||    
6309495 cccttacactaacattttaggtaccaaagaagagatggtctatgctttg 6309543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 25674176 - 25674216
Alignment:
464 aagttgaccccttacaccaacattttaggtgccaaagaaga 504  Q
    |||||||||||||||||||||||||||||| | ||||||||    
25674176 aagttgaccccttacaccaacattttaggtactaaagaaga 25674216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 548
Target Start/End: Original strand, 28201902 - 28201978
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttacttaatgcgcgtatgagga 548  Q
    |||||||||||| |||||| ||   |||||||||||||||||| |||||||||| || ||| | ||||||| |||||    
28201902 cccttacaccaatattttaagtattaaagaagagatgatgtattctttggtgttcttgcttgaagcgcgtacgagga 28201978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 42862173 - 42862221
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| || ||||||||| |||||||||||||||| |||||||||    
42862173 cccttacactaatattttaggtaccaaagaagagatgatttatgctttg 42862221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 548
Target Start/End: Original strand, 30910558 - 30910634
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttacttaatgcgcgtatgagga 548  Q
    ||||||||| || ||||||||| | |||||||||||| | |||||||||  |||||| ||||| | ||||| |||||    
30910558 cccttacactaatattttaggtacgaaagaagagatggtttatgctttgaagtttttgcttaaagtgcgtacgagga 30910634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 18292150 - 18292102
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
18292150 cccttacactaacattttaggtaccaaagaagagatgatttatgctttg 18292102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 14491348 - 14491402
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    |||||||| |||||||||| || ||||| ||||||||||||||| |||||||||||    
14491348 cccttacaacaacattttatgtaccaaa-aagagatgatgtatgttttggtgtttt 14491402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 12773838 - 12773784
Alignment:
474 cttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgttttt 528  Q
    ||||||| ||| |||||||| |||||||||||||  ||||||||| |||||||||    
12773838 cttacactaaccttttaggtaccaaagaagagatagtgtatgcttcggtgttttt 12773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 27976433 - 27976395
Alignment:
479 accaacattttaggtgccaaagaagagatgatgtatgct 517  Q
    ||||||||||||||| |||||||||||||||||| ||||    
27976433 accaacattttaggtaccaaagaagagatgatgtgtgct 27976395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 28062961 - 28062923
Alignment:
479 accaacattttaggtgccaaagaagagatgatgtatgct 517  Q
    ||||||||||||||| |||||||||||||||||| ||||    
28062961 accaacattttaggtaccaaagaagagatgatgtgtgct 28062923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 510
Target Start/End: Complemental strand, 34397262 - 34397224
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgat 510  Q
    ||||||||| |||||||||||| ||||||||||||||||    
34397262 cccttacactaacattttaggtaccaaagaagagatgat 34397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 29271378 - 29271438
Alignment:
467 ttgaccccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttt 527  Q
    |||| ||| ||||||||||||||||||  ||||||||| | | |||||| |||||||||||    
29271378 ttgagcccatacaccaacattttaggtatcaaagaagatacggtgtatgatttggtgtttt 29271438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 35670174 - 35670126
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| || ||||||||| |||||||||||||| | |||||||||    
35670174 cccttacactaatattttaggtaccaaagaagagatggtatatgctttg 35670126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 40448280 - 40448328
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||| |||||    
40448280 cccttgcactaacattttaggtaccaaagaagagatgatctatactttg 40448328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 26162354 - 26162397
Alignment:
468 tgaccccttacaccaacattttaggtgccaaagaagagatgatg 511  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
26162354 tgaccccttacaccaacattttaggttctaaagaagagatgatg 26162397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 44436901 - 44436949
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||    
44436901 cccttacactaacattttaggtaccaaagaagagatggtctatgctttg 44436949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 518
Target Start/End: Complemental strand, 21231151 - 21231113
Alignment:
480 ccaacattttaggtgccaaagaagagatgatgtatgctt 518  Q
    |||||||||||||| |||||||||||||||||| |||||    
21231151 ccaacattttaggtaccaaagaagagatgatgtgtgctt 21231113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 6150319 - 6150367
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||| | |||||||||||||| | |||||||||    
6150319 cccttacactaacattttagataccaaagaagagatggtctatgctttg 6150367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 41957866 - 41957818
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| || ||||||||| |||||||||||||| | |||||||||    
41957866 cccttacactaatattttaggtaccaaagaagagatggtctatgctttg 41957818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 1745 - 1697
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| |||||||||||| |||||||||||||||| ||| |||||    
1745 cccttacactaacattttaggtaccaaagaagagatgatctatactttg 1697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 231 - 279
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttg 520  Q
    ||||||||| ||||||||||||  ||||||||||||||| |||||||||    
231 cccttacactaacattttaggtaacaaagaagagatgatttatgctttg 279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 541
Target Start/End: Original strand, 32101 - 32170
Alignment:
472 cccttacaccaacattttaggtgccaaagaagagatgatgtatgctttggtgtttttacttaatgcgcgt 541  Q
    ||||||||||||||||||||||  |||| |||| ||  ||||||||||||| ||||| ||| | ||||||    
32101 cccttacaccaacattttaggtatcaaataagacattgtgtatgctttggtatttttgcttgaagcgcgt 32170  T

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