View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_39 (Length: 261)
Name: NF0719_low_39
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_39 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 43202515 - 43202737
Alignment:
| Q |
39 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacaccactaattcagcaagctcatgtgccacgttattccnnn |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43202515 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacaccactaattcagcaagctcatgtgccacggtattccaaa |
43202614 |
T |
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| Q |
139 |
nnnnntgggtcatgctgagagagagaatgaagaaggaaatagatacatctcacattaaaggatcctccttcctgcatctatttcctttgattttcctaga |
238 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43202615 |
aaaaatgggtcatgctgagagagagaatgaagaaggaaatggatacatctcacattaaaggatcctccttcctgcatctatttcctttgattttcctaca |
43202714 |
T |
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| Q |
239 |
gctcatgtgccacgttattcttc |
261 |
Q |
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|||||||||||||||||||||| |
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| T |
43202715 |
tctcatgtgccacgttattcttc |
43202737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 31845485 - 31845424
Alignment:
| Q |
39 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacac |
100 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||| |||| |
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| T |
31845485 |
gatttctatcaattccaaacaccactaattcaattaaaactcatctccatcatcaaacacac |
31845424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 43441777 - 43441838
Alignment:
| Q |
39 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacac |
100 |
Q |
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| T |
43441777 |
gatttctatcaattccaaacaccactaattcaattaaaactcatctccattatcaaacacac |
43441838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 26630219 - 26630280
Alignment:
| Q |
39 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacac |
100 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||| |||| |
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| T |
26630219 |
gatttctatcaattccaaacaccactaattcaattaaaactcatctccatcatcaaacacac |
26630280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 36845826 - 36845882
Alignment:
| Q |
39 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaa |
95 |
Q |
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|||||||||||||| || ||| || |||||||||||||||||||| ||||||||||| |
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| T |
36845826 |
gatttctatcaattacaaacatcactaattcaattaaaactcatctccattatcaaa |
36845882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 48527946 - 48528007
Alignment:
| Q |
39 |
gatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacac |
100 |
Q |
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|||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||| |
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| T |
48527946 |
gatttctatcaattcctaaccccactaattcaattaaaactcatcaccattatcaaacacac |
48528007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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