View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0719_low_4 (Length: 545)

Name: NF0719_low_4
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0719_low_4
NF0719_low_4
[»] chr8 (13 HSPs)
chr8 (125-531)||(23745876-23746289)
chr8 (103-285)||(21208566-21208748)
chr8 (117-285)||(14887299-14887467)
chr8 (119-214)||(22835371-22835466)
chr8 (103-198)||(18236943-18237038)
chr8 (103-198)||(18246394-18246489)
chr8 (48-98)||(18237397-18237447)
chr8 (48-98)||(18246848-18246898)
chr8 (103-203)||(20748621-20748721)
chr8 (103-198)||(33597564-33597659)
chr8 (48-90)||(12920292-12920334)
chr8 (103-192)||(12919836-12919925)
chr8 (53-101)||(45494481-45494529)
[»] scaffold0163 (2 HSPs)
scaffold0163 (103-531)||(19803-20229)
scaffold0163 (2-101)||(20585-20682)
[»] chr5 (16 HSPs)
chr5 (1-275)||(21081309-21081582)
chr5 (377-531)||(21081583-21081737)
chr5 (103-285)||(27416694-27416876)
chr5 (103-309)||(20952400-20952606)
chr5 (103-285)||(18384303-18384485)
chr5 (103-285)||(26197921-26198103)
chr5 (103-214)||(33943954-33944065)
chr5 (117-285)||(19381388-19381556)
chr5 (103-203)||(30450278-30450378)
chr5 (103-198)||(24296248-24296343)
chr5 (103-203)||(24416830-24416930)
chr5 (48-98)||(24295842-24295892)
chr5 (50-90)||(723751-723791)
chr5 (53-101)||(15326043-15326091)
chr5 (53-101)||(18712678-18712726)
chr5 (117-165)||(26040415-26040463)
[»] chr3 (12 HSPs)
chr3 (103-519)||(40089318-40089732)
chr3 (103-440)||(2159237-2159579)
chr3 (103-285)||(6426870-6427052)
chr3 (103-285)||(8977409-8977591)
chr3 (130-285)||(16406172-16406327)
chr3 (103-285)||(9541699-9541881)
chr3 (2-101)||(2159935-2160032)
chr3 (2-101)||(40088865-40088962)
chr3 (117-203)||(28360381-28360467)
chr3 (462-519)||(2159165-2159222)
chr3 (50-90)||(19689490-19689530)
chr3 (160-200)||(25507093-25507133)
[»] scaffold0066 (1 HSPs)
scaffold0066 (156-524)||(1799-2175)
[»] chr1 (2 HSPs)
chr1 (103-531)||(20175248-20175674)
chr1 (50-90)||(21755912-21755952)
[»] scaffold0145 (1 HSPs)
scaffold0145 (103-285)||(33497-33679)
[»] chr6 (9 HSPs)
chr6 (103-285)||(24927761-24927943)
chr6 (103-285)||(16902509-16902691)
chr6 (103-285)||(31361382-31361564)
chr6 (130-285)||(18164628-18164783)
chr6 (103-216)||(27746664-27746777)
chr6 (50-90)||(8999539-8999579)
chr6 (50-90)||(9008707-9008747)
chr6 (48-90)||(27746255-27746297)
chr6 (160-216)||(11378009-11378065)
[»] chr4 (7 HSPs)
chr4 (117-285)||(16269619-16269787)
chr4 (103-285)||(6696781-6696963)
chr4 (117-285)||(17155979-17156147)
chr4 (103-203)||(26816491-26816591)
chr4 (103-203)||(54695462-54695562)
chr4 (50-90)||(116842-116882)
chr4 (53-101)||(14936983-14937031)
[»] chr2 (8 HSPs)
chr2 (103-309)||(27165576-27165782)
chr2 (117-214)||(45018984-45019081)
chr2 (103-285)||(9509360-9509542)
chr2 (103-285)||(18655781-18655963)
chr2 (117-204)||(22103158-22103245)
chr2 (160-195)||(29847521-29847556)
chr2 (136-195)||(29862811-29862870)
chr2 (137-206)||(22906787-22906856)
[»] scaffold0313 (2 HSPs)
scaffold0313 (117-286)||(14119-14288)
scaffold0313 (117-208)||(40-131)
[»] scaffold0611 (1 HSPs)
scaffold0611 (117-285)||(2509-2677)
[»] chr7 (13 HSPs)
chr7 (103-285)||(16137780-16137962)
chr7 (103-285)||(6539040-6539222)
chr7 (103-285)||(26353895-26354077)
chr7 (103-285)||(32102943-32103125)
chr7 (103-285)||(46501677-46501859)
chr7 (117-285)||(9540850-9541018)
chr7 (103-261)||(5387511-5387669)
chr7 (103-285)||(8505612-8505794)
chr7 (103-285)||(44901920-44902102)
chr7 (117-214)||(18663519-18663616)
chr7 (103-203)||(15179736-15179836)
chr7 (50-90)||(611425-611465)
chr7 (48-90)||(14640038-14640080)
[»] scaffold0254 (1 HSPs)
scaffold0254 (103-285)||(13574-13756)
[»] scaffold0141 (1 HSPs)
scaffold0141 (117-208)||(30523-30614)
[»] scaffold0049 (2 HSPs)
scaffold0049 (117-208)||(84198-84289)
scaffold0049 (160-216)||(19201-19257)
[»] scaffold0059 (1 HSPs)
scaffold0059 (103-207)||(46020-46124)
[»] scaffold0764 (1 HSPs)
scaffold0764 (117-208)||(6489-6580)
[»] scaffold0572 (1 HSPs)
scaffold0572 (103-208)||(19-124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (117-214)||(32516-32613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (137-285)||(153135-153283)
[»] scaffold0028 (2 HSPs)
scaffold0028 (103-203)||(99976-100076)
scaffold0028 (50-90)||(86433-86473)
[»] scaffold0010 (4 HSPs)
scaffold0010 (103-198)||(261085-261180)
scaffold0010 (103-198)||(263388-263483)
scaffold0010 (48-98)||(261539-261589)
scaffold0010 (48-98)||(263842-263892)
[»] scaffold0233 (1 HSPs)
scaffold0233 (103-203)||(6894-6994)
[»] scaffold0021 (1 HSPs)
scaffold0021 (160-216)||(167490-167546)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 125 - 531
Target Start/End: Original strand, 23745876 - 23746289
Alignment:
Q  125 actaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggta 224  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  23745876 actaatctttccttgtttctgacaaccttaccattttcatctagtatatctctgaacacccatcttgttccaatgatggtttcgtcttgaggttcaggta 23745975  T
Q  225 ccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatagcttcatttaaggattttggctc 324  Q
    || |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  23745976 ccgaattccagactttgtttctctcaaattgagaaagctcttaagtcatggcttcaatccatgattgattagtgataacttcatttatggattttggctc 23746075  T
Q  325 catttggaaaatcatagcca-----nnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttagggtgatca 419  Q
     |||||  |||||||| |||             |||  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  23746076 tatttgagaaatcataaccatgtttgatttgtgttgttatgatgatcttgttcttactttatcagcagagtcacaaatgattaactctttaggatgatca 23746175  T
Q  420 acaacggatttccagcatggacg--tggatagagaagattaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaat 517  Q
    ||||| |||||||||| ||||||  |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23746176 acaactgatttccagcttggacgaatggatagagaagatgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaat 23746275  T
Q  518 gatgatgtccatct 531  Q
     ||||||| |||||    
T  23746276 aatgatgttcatct 23746289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 21208566 - 21208748
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  21208566 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 21208665  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  21208666 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 21208748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 285
Target Start/End: Original strand, 14887299 - 14887467
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||||||||| ||||| ||||||||||||||||||||   || ||| || || ||||| |||||||||||||||||||||||| |||||||||||      
T  14887299 cttgagcaactaaccttgctttgtttctgacaaccttacctcctttatcaagcttgtttctaaacacccatcttgttccaatgatgcttttgtcttgatt 14887398  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
     | ||| || || ||||| |||||||| || ||| | |||||||| || ||  ||||||| ||||||||    
T  14887399 atttggaactaagttccaaactttgtttctttcaaactgagaaagttcctccttcatggcctcaatcca 14887467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 22835466 - 22835371
Alignment:
Q  119 tgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 214  Q
    ||||||||||| ||||| |||||||||||||||||||| | |||||| || ||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  22835466 tgagcaactaaccttgcattgtttctgacaaccttaccttcttcatcaagcttatttctgaaaacctatcttgtaccaatgatggttttgccttga 22835371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 18237038 - 18236943
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 198  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  18237038 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 18236943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 18246489 - 18246394
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 198  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  18246489 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 18246394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 18237447 - 18237397
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatcaaaataga 98  Q
    ||||||||||||||||||||||||||||||| || || ||||||| |||||    
T  18237447 cttcacacattttttcatttgtagatccaaaaataatgtcatcaacataga 18237397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 18246898 - 18246848
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatcaaaataga 98  Q
    ||||||||||||||||||||||||||||||| || || ||||||| |||||    
T  18246898 cttcacacattttttcatttgtagatccaaaaataatgtcatcaacataga 18246848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 20748721 - 20748621
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||| | ||| || || | ||||| |||||||||||| || || ||||||||||||||||||    
T  20748721 ttgttgattgtacccttgagctaccaatctagctttgtttcttataacttttccttcttcatttagtttatttctaaatactcatcttgttccaatgatg 20748622  T
Q  203 g 203  Q
    |    
T  20748621 g 20748621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 33597564 - 33597659
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 198  Q
    ||||||||||||  |||| || |||||||| || || ||||||| ||| || || | |||||||| ||| |||||||| |||||||| ||||||||    
T  33597564 ttgttgattatacccttgtgcgactaatctcgctttatttctgataacttttccttcttcatctaatttgtttctgaaaacccatctggttccaat 33597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 12920334 - 12920292
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||| |||||||||||||||||| || ||||||||    
T  12920334 cttcacacatttgttcatttgtagatccaaaaataatatcatc 12920292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 12919925 - 12919836
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgt 192  Q
    ||||||||||||  |||| || |||||||| || || ||||||||||| || || | |||||||| ||| |||||||| ||||| |||||    
T  12919925 ttgttgattatagccttgtgctactaatctagctttatttctgacaacttttccttcttcatctaatttgtttctgaagacccaccttgt 12919836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 45494481 - 45494529
Alignment:
Q  53 cacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||| ||||    
T  45494481 cacattttttcatttgtagctccaaaaatgatatcgtcaacatatactt 45494529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 103 - 531
Target Start/End: Complemental strand, 20229 - 19803
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20229 ttgttgattataaccttgagcaactagtcttgctttgtttctgaccactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgatg 20130  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 302  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20129 gttttgtctcgaggttcaggtactaaattccagactttgtttctttcaaactgagaaagctcttcagtcatggcttcaatccatgattgatcaatgatag 20030  T
Q  303 cttcatttaaggattttggctccatttggaaaatcatagcca-----nnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 397  Q
    ||||||||| ||||||||||||||||||  ||||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  20029 cttcatttatggattttggctccatttgagaaatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 19930  T
Q  398 gattaactctttagggtgatcaacaacggatttccagcatggacgtggatagagaagattaatctggttcgtcttcaaccttttgttttgatatatcaga 497  Q
    |||||| ||||| || ||||||||||| |||||||||| ||||   |||  ||    || |||||||||| |||||| ||||||||||||||||||||||    
T  19929 gattaattcttttggatgatcaacaactgatttccagcttgga---ggaatga----atgaatctggttcatcttcatccttttgttttgatatatcaga 19837  T
Q  498 agtttgttgatgactagaatgatgatgtccatct 531  Q
     |||||||||||||||||||||||| || |||||    
T  19836 ggtttgttgatgactagaatgatgaggttcatct 19803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 20682 - 20585
Alignment:
Q  2 catcatacgcatctcaaattcacttcgcatgaggttagnnnnnnnncttcacacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    |||||||| ||| |||||||||||| ||||||||||||        | ||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  20682 catcatactcatttcaaattcactttgcatgaggttagaaaaat--cctcacacattttttcatttgtagatccaaaaataatatcatcaacatagactt 20585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 21081309 - 21081582
Alignment:
Q  1 tcatcatacgcatctcaaattcacttcgcatgaggttagnnnnnnnncttcacacattttttcatttgtagatccaaagatgatatcatcaaaatagact 100  Q
    ||||||||| |||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21081309 tcatcatactcatctcaaattcacttcgcatgaggttagaaaaaaccct-cacacattttttcatttgtagatccaaagatgatatcatcaaaatagact 21081407  T
Q  101 ttttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatga 200  Q
    | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21081408 tcttgttgattataaccttgagcaactaatcttggcttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaatga 21081507  T
Q  201 tggttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatgg 275  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  21081508 tggttttgtcttgaggttcagataccaaattccagactttgttcctctcaaattgagaaagctattcagtcatgg 21081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 377 - 531
Target Start/End: Original strand, 21081583 - 21081737
Alignment:
Q  377 tttgtcagcagtgtcacaaatgattaactctttagggtgatcaacaacggatttccagcatggacgtggatagagaagattaatctggttcgtcttcaac 476  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  21081583 tttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactaatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaac 21081682  T
Q  477 cttttgttttgatatatcagaagtttgttgatgactagaatgatgatgtccatct 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21081683 attttgttttgatatatcagaagtttgttgatgactagaatgatgatgttcatct 21081737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 27416876 - 27416694
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||| |||||||| |||||| ||||||||||||||    
T  27416876 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagtttgtttctgaaaacccatgttgttccaatgatg 27416777  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  27416776 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 27416694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 103 - 309
Target Start/End: Complemental strand, 20952606 - 20952400
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||| ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || || ||||| |||||||||||||||||||||    
T  20952606 ttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcctgaaaacccatcttgttccaatgatg 20952507  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 302  Q
    ||||||  ||||   | ||| || |||||||| ||||| || || ||| | |||||||| |||||  ||||||||||||||||| | | |||| |||| |    
T  20952506 gttttgctttgattatttggaactaaattccaaactttatttctttcaaactgagaaagttcttccttcatggcttcaatccatgagtcatcaatgatgg 20952407  T
Q  303 cttcatt 309  Q
    |||||||    
T  20952406 cttcatt 20952400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 18384485 - 18384303
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  18384485 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 18384386  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  18384385 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 18384303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 26197921 - 26198103
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  26197921 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 26198020  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  26198021 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 26198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 33944065 - 33943954
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  33944065 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 33943966  T
Q  203 gttttgtcttga 214  Q
    ||||| ||||||    
T  33943965 gttttatcttga 33943954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 285
Target Start/End: Original strand, 19381388 - 19381556
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||||||||| ||||| |||||||| ||||||||||| | |||||| || || |||||||| ||| ||||||| ||||||||||||||| |||||      
T  19381388 cttgagcaactaaccttgctttgtttctaacaaccttaccttcttcatcaagcttgtttctgaaaacctatcttgtaccaatgatggttttgccttgatc 19381487  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
     | ||| || || ||||| |||||||| || ||| | |||||||| | |||  ||||||| ||||||||    
T  19381488 atttggaactaagttccaaactttgtttctttcaaactgagaaagttattctttcatggcctcaatcca 19381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 30450278 - 30450378
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  30450278 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 30450377  T
Q  203 g 203  Q
    |    
T  30450378 g 30450378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 24296248 - 24296343
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 198  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  24296248 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 24296343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 24416930 - 24416830
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || ||||||||||  || || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  24416930 ttgttgattgtacccttgagctaccaatctagctttgtttctgatgacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 24416831  T
Q  203 g 203  Q
    |    
T  24416830 g 24416830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 24295842 - 24295892
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatcaaaataga 98  Q
    ||||||||||||||||||||||||||||||| || || ||||||| |||||    
T  24295842 cttcacacattttttcatttgtagatccaaaaataatgtcatcaacataga 24295892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 723751 - 723791
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  723751 tcacacattttttcatttgtagctccaaaaatgatatcatc 723791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 15326043 - 15326091
Alignment:
Q  53 cacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||| ||||    
T  15326043 cacattttttcatttgtagctccaaaaatgatatcgtcaacatatactt 15326091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 18712726 - 18712678
Alignment:
Q  53 cacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||| ||||    
T  18712726 cacattttttcatttgtagctccaaaaatgatatcgtcaacatatactt 18712678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 26040415 - 26040463
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatc 165  Q
    ||||||| |||||||||||||||||||||   || ||||||||||||||    
T  26040415 cttgagctactaatcttgccttgtttctggttacattaccattttcatc 26040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 103 - 519
Target Start/End: Original strand, 40089318 - 40089732
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||||||| ||||||| |||| |||||| |||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  40089318 ttgttgattataaccttgagctactagtcttgctttgtttcttaccactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgata 40089417  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 302  Q
    ||||||||||||||||| ||||| ||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||| |||||||| ||||||    
T  40089418 gttttgtcttgaggttcaggtactaaattccagactttgtttctttcaaattgagaaagttcttcagtcatggcttcaatccatgattgatcaatgatag 40089517  T
Q  303 cttcatttaaggattttggctccatttggaaaatcatagcca-----nnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 397  Q
    ||||||||| ||||||||||||||||||  ||||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  40089518 cttcatttatggattttggctccatttgagaaatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 40089617  T
Q  398 gattaactctttagggtgatcaacaacggatttccagcatggacgtggatagagaagattaatctggttcgtcttcaaccttttgttttgatatatcaga 497  Q
    |||||| |||||||| ||||||||||| |||||||||  ||||   |||  ||    || ||| |||||| ||||||  ||| |||||||||| ||||||    
T  40089618 gattaattctttaggatgatcaacaactgatttccagtttgga---ggaatga----atgaatttggttcatcttcattcttctgttttgatacatcaga 40089710  T
Q  498 agtttgttgatgactagaatga 519  Q
     ||||||||||| |||||||||    
T  40089711 ggtttgttgatgtctagaatga 40089732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 103 - 440
Target Start/End: Complemental strand, 2159579 - 2159237
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2159579 ttgttgattataaccttgagcaactagccttgctttgtttctgacaactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgatg 2159480  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 302  Q
    ||||||||| | ||||| ||||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  2159479 gttttgtctcgtggttcaggtactaaattccagactttgtttctttcaaattgagaaagttcttcattcatggcttcaatccatgattgatcaatgatag 2159380  T
Q  303 cttcatttaaggattttggctccatttggaaaatcatagcca-----nnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 397  Q
    ||||||||| ||||||||||||||||||  | ||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  2159379 cttcatttatggattttggctccatttgagagatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 2159280  T
Q  398 gattaactctttagggtgatcaacaacggatttccagcatgga 440  Q
    |||||| |||||||| ||||||||||| |||||||||| ||||    
T  2159279 gattaattctttaggatgatcaacaactgatttccagcttgga 2159237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 6427052 - 6426870
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||    
T  6427052 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 6426953  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  6426952 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 6426870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 8977591 - 8977409
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  8977591 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 8977492  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  8977491 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 8977409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 16406327 - 16406172
Alignment:
Q  130 tcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaa 229  Q
    |||||| |||||||||||||| ||||| | |||||| || || |||||||| |||||||||||||||||||||||||| ||||||   | ||| |||||     
T  16406327 tcttgctttgtttctgacaactttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttatcttgattatttggaaccaag 16406228  T
Q  230 ttccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  16406227 ttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 16406172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 9541881 - 9541699
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| | ||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  9541881 ttgttggttgtaaccttgagcaactaaccgtgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 9541782  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  9541781 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 9541699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 2160032 - 2159935
Alignment:
Q  2 catcatacgcatctcaaattcacttcgcatgaggttagnnnnnnnncttcacacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    |||||||| |||||||||||||||| ||||||||||||        ||||||||||||| ||||||||||||||||| || |||||||||| ||||||||    
T  2160032 catcatactcatctcaaattcactttgcatgaggttagagaaat--cttcacacattttctcatttgtagatccaaaaataatatcatcaacatagactt 2159935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 40088865 - 40088962
Alignment:
Q  2 catcatacgcatctcaaattcacttcgcatgaggttagnnnnnnnncttcacacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    |||||||| |||||||||||||||| ||||||||||||        ||||||||||||| ||||||||||||||||| || |||||||||| ||||||||    
T  40088865 catcatactcatctcaaattcactttgcatgaggttagagaaat--cttcacacattttctcatttgtagatccaaaaataatatcatcaacatagactt 40088962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 28360381 - 28360467
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatgg 203  Q
    ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || || |||||||||||||||||||    
T  28360381 cttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacacatcttgttccaatgatgg 28360467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 519
Target Start/End: Complemental strand, 2159222 - 2159165
Alignment:
Q  462 tggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatga 519  Q
    |||||| ||||||  ||| |||||||||| |||||| ||||||||||| |||||||||    
T  2159222 tggttcatcttcattcttctgttttgatacatcagaggtttgttgatgtctagaatga 2159165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 19689530 - 19689490
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||| ||||| |||||| |||||||||||    
T  19689530 tcacacattttttcatctgtagctccaaaaatgatatcatc 19689490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 25507093 - 25507133
Alignment:
Q  160 ttcatctagtttatttctgaacacccatcttgttccaatga 200  Q
    |||||||||||| ||||| || |||||||||||||||||||    
T  25507093 ttcatctagtttgtttctaaaaacccatcttgttccaatga 25507133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 156 - 524
Target Start/End: Original strand, 1799 - 2175
Alignment:
Q  156 cattttcatctagtttatttctga-acacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaattccagactttgttcctctcagatt 254  Q
    |||||||||| ||| ||||||||| |||| ||| |||||||||||||||||| ||||||| |||  |||||||||||||| |||||||| |||||| |||    
T  1799 cattttcatccagtatatttctgacacacgcattttgttccaatgatggtttcgtcttgatgtttaggtaccaaattccatactttgtttctctcaaatt 1898  T
Q  255 gagaaagctcttcagtcatggcttcaatccattattgatcagtgatagcttcatttaaggattttggctccatttggaaaatcatagccannnnnnn--- 351  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||| |||||||||||| |||||  |||||| |||||              
T  1899 gagaaagctcttcagtcatggcttcaatccatgattgattaatgataacttcatttatggattttggctctatttgagaaatcaaagccatatttgattt 1998  T
Q  352 --cttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttagggtgatcaacaacggatttccagcatggacg--tggat 447  Q
      ||||  |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||| |  |||||    
T  1999 gtcttgttatgatgatcttgttcttactttatcagcagtgtcaccaatgattaactctttaggatgatcaacaactgatttccagcttggaggaatggat 2098  T
Q  448 agagaagattaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg 524  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2099 agagaagatgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg 2175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 103 - 531
Target Start/End: Complemental strand, 20175674 - 20175248
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20175674 ttgttgattataaccttgagcaactagccttgctttgtttctgacaactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgatg 20175575  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 302  Q
    ||||||||| | ||||  ||||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  20175574 gttttgtctcgtggtttaggtactaaattccagactttgtttctttcaaattgagaaagttcttcattcatggcttcaatccatgattgatcaatgatag 20175475  T
Q  303 cttcatttaaggattttggctccatttggaaaatcatagcca-----nnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 397  Q
    ||||||||| ||||||||||||||||||  | ||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  20175474 cttcatttatggattttggctccatttgagatatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 20175375  T
Q  398 gattaactctttagggtgatcaacaacggatttccagcatggacgtggatagagaagattaatctggttcgtcttcaaccttttgttttgatatatcaga 497  Q
    |||||| | ||| || ||||||||||| |||||||||| ||||   |||  |     || ||| || ||| ||||||   ||||||||||||||||||||    
T  20175374 gattaatttttttggatgatcaacaactgatttccagcttgga---ggaatg----tatgaatttgtttcatcttcatttttttgttttgatatatcaga 20175282  T
Q  498 agtttgttgatgactagaatgatgatgtccatct 531  Q
     ||||||||||| |||||||||||| || |||||    
T  20175281 tgtttgttgatgtctagaatgatgaggttcatct 20175248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 21755952 - 21755912
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  21755952 tcacacattttttcatttgtggttccaaaaatgatatcatc 21755912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 33497 - 33679
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||  | |||||| || || |||||||| |||||||||||||||||||||    
T  33497 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttacgttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 33596  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||||||||||  || ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  33597 gttttgtcttgattttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 33679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 24927761 - 24927943
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||    
T  24927761 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 24927860  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  24927861 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 24927943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 16902691 - 16902509
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  16902691 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 16902592  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  16902591 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 16902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 31361564 - 31361382
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  31361564 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 31361465  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  31361464 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 31361382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 18164783 - 18164628
Alignment:
Q  130 tcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaa 229  Q
    |||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||||||| ||||||   | ||| |||||     
T  18164783 tcttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatggttttatcttgattatttggaaccaag 18164684  T
Q  230 ttccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  18164683 ttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 18164628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 27746664 - 27746777
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||||||  |||| || |||||||| || |||||||  | ||  || || | |||||||||||| ||||| || ||||||||||||||||| ||     
T  27746664 ttgttgattatatccttgtgccactaatctggctttgtttcgaataattttgccttcttcatctagtttgtttctaaaaacccatcttgttccaataatt 27746763  T
Q  203 gttttgtcttgagg 216  Q
    |||| |||||||||    
T  27746764 gtttggtcttgagg 27746777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 8999579 - 8999539
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  8999579 tcacacattttttcatttgtagctccaaaaatgatatcatc 8999539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 9008747 - 9008707
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  9008747 tcacacattttttcatttgtagctccaaaaatgatatcatc 9008707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 27746255 - 27746297
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| | |||||| |||||||||||    
T  27746255 cttcacacattttttcatttgtggctccaaaaatgatatcatc 27746297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 11378065 - 11378009
Alignment:
Q  160 ttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||| |||||| ||||| || |||||||||||||||||||| ||||  ||||||||    
T  11378065 ttcatttagtttgtttctaaaaacccatcttgttccaatgattgtttgatcttgagg 11378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 16269787 - 16269619
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||||||||| ||||| |||||||||||||||||||  | |||||| || || |||||||| |||||||||||||||||||||||||||||||||      
T  16269787 cttgagcaactaaccttgctttgtttctgacaaccttacgttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttgtcttgatt 16269688  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    || ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  16269687 ttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 16269619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 6696963 - 6696781
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  6696963 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 6696864  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  6696863 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 6696781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 17156147 - 17155979
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || ||| |||| || |||||||| ||||||||||||||| |||||      
T  17156147 cttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttatgaaaactcatcttgtaccaatgatggttttgccttgatc 17156048  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
     | ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  17156047 atttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 17155979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 26816591 - 26816491
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  26816591 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 26816492  T
Q  203 g 203  Q
    |    
T  26816491 g 26816491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 54695462 - 54695562
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  54695462 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 54695561  T
Q  203 g 203  Q
    |    
T  54695562 g 54695562  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 116882 - 116842
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  116882 tcacacattttttcatttgtagctccaaaaatgatatcatc 116842  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 14937031 - 14936983
Alignment:
Q  53 cacattttttcatttgtagatccaaagatgatatcatcaaaatagactt 101  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||| ||||    
T  14937031 cacattttttcatttgtagctccaaaaatgatatcgtcaacatatactt 14936983  T

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Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 103 - 309
Target Start/End: Original strand, 27165576 - 27165782
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||| ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || || ||||| |||||||||||||||||||||    
T  27165576 ttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcctgaaaacccatcttgttccaatgatg 27165675  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 302  Q
    ||||||  ||||   | ||| || |||||||| |||||||| || ||| | |||||||| |||||  ||||||||||||||||| | | |||| |||| |    
T  27165676 gttttgctttgattatttggaactaaattccaaactttgtttctttcaaactgagaaagttcttccttcatggcttcaatccatgagtcatcaatgatgg 27165775  T
Q  303 cttcatt 309  Q
    |||||||    
T  27165776 cttcatt 27165782  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 45019081 - 45018984
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 214  Q
    ||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  45019081 cttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagtttgtttctgaaaacccatcttgttccaatgatggttttgtcttga 45018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 9509360 - 9509542
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  9509360 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 9509459  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  9509460 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 9509542  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 18655963 - 18655781
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  18655963 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 18655864  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| ||| |||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  18655863 gttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcca 18655781  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 22103245 - 22103158
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggt 204  Q
    |||||||||| |||||||||||||||||  |||| ||  ||| |||||| || |||||||| ||||||||||||||||||||||||||    
T  22103245 cttgagcaaccaatcttgccttgtttctagcaactttgtcatcttcatcaagcttatttctaaacacccatcttgttccaatgatggt 22103158  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 29847521 - 29847556
Alignment:
Q  160 ttcatctagtttatttctgaacacccatcttgttcc 195  Q
    |||||||||||||||| |||||||||||||||||||    
T  29847521 ttcatctagtttatttttgaacacccatcttgttcc 29847556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 29862811 - 29862870
Alignment:
Q  136 cttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttcc 195  Q
    |||||||||||  |||||||  | |||||||||||| |||||||||||||||||| ||||    
T  29862811 cttgtttctgatcaccttactttcttcatctagtttgtttctgaacacccatcttattcc 29862870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 22906856 - 22906787
Alignment:
Q  137 ttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttt 206  Q
    |||||||||| ||||||||| | |||||| || || ||||| || | ||||||||||| |||||||||||    
T  22906856 ttgtttctgaaaaccttaccttcttcatcaagcttgtttctaaaaatccatcttgttctaatgatggttt 22906787  T

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Target: scaffold0313 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 14288 - 14119
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||||||||  ||||      
T  14288 cttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttgctttgatt 14189  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccat 286  Q
     | ||| || |||||||| |||||||| || ||| |||||||||| |||||  |||||||||||||||||    
T  14188 atttggaactaaattccaaactttgtttctttcaaattgagaaagttcttccttcatggcttcaatccat 14119  T

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Target: scaffold0313; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 131 - 40
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 208  Q
    ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  131 cttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 2677 - 2509
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||||||||| ||||| ||||||||||||||||||   | |||||| || || |||||||| |||||||||||||||||||||||||||||||||      
T  2677 cttgagcaactaaccttgctttgtttctgacaaccttaaattcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttgtcttgatt 2578  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    || ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  2577 ttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 2509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 16137780 - 16137962
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  16137780 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 16137879  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||| | ||||||||    
T  16137880 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatgacctcaatcca 16137962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 6539222 - 6539040
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  6539222 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 6539123  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  6539122 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 6539040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 26353895 - 26354077
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  26353895 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 26353994  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  26353995 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 26354077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 32103125 - 32102943
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  32103125 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 32103026  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  32103025 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 32102943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 46501859 - 46501677
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  46501859 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 46501760  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  46501759 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 46501677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 117 - 285
Target Start/End: Original strand, 9540850 - 9541018
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    ||||||||||||| ||||| |||||| ||||||||||||| | |||||| ||||| |||||||| | ||||||||||||||||||||||||||||| |      
T  9540850 cttgagcaactaaccttgctttgtttttgacaaccttaccttcttcatcaagtttgtttctgaaaatccatcttgttccaatgatggttttgtcttaatt 9540949  T
Q  217 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
     | ||| || |  ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  9540950 atttggaactaggttccaaactttgtttctttcatactgagaaagttcttccttcatggcctcaatcca 9541018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 5387511 - 5387669
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  5387511 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 5387610  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaag 261  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | ||||||||    
T  5387611 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaag 5387669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 8505794 - 8505612
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  8505794 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 8505695  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| ||| |||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  8505694 gttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcca 8505612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 44902102 - 44901920
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  44902102 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 44902003  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| ||| |||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  44902002 gttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcca 44901920  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 18663616 - 18663519
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 214  Q
    |||||||||| || ||||| |||||||||||||||||||  | |||||| || || ||| |||| | ||||||||||||||||||||||||| |||||    
T  18663616 cttgagcaaccaaccttgctttgtttctgacaaccttactttcttcatcaagcttgtttttgaaaaaccatcttgttccaatgatggttttgccttga 18663519  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 15179836 - 15179736
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  15179836 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 15179737  T
Q  203 g 203  Q
    |    
T  15179736 g 15179736  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 611465 - 611425
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  611465 tcacacattttttcatttgtagctccaaaaatgatatcatc 611425  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 14640038 - 14640080
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||| |||||||||||||||||| || ||||||||    
T  14640038 cttcacacatttgttcatttgtagatccaaaaataatatcatc 14640080  T

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Target: scaffold0254 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 13574 - 13756
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  13574 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 13673  T
Q  203 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  13674 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 13756  T

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Target: scaffold0141 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 30614 - 30523
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 208  Q
    ||||||||||||| ||||| ||||||||||||||||| || | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  30614 cttgagcaactaaccttgctttgtttctgacaacctttccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 30523  T

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Target: scaffold0049 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 84198 - 84289
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 208  Q
    ||||||||||||| ||||| ||||||||||||||||| || | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  84198 cttgagcaactaaccttgctttgtttctgacaacctttccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 84289  T

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Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 19257 - 19201
Alignment:
Q  160 ttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    |||||||||||| ||||| || ||||||||||||||||| || ||||  ||||||||    
T  19257 ttcatctagtttgtttctaaagacccatcttgttccaataattgtttgatcttgagg 19201  T

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Target: scaffold0059 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 46020 - 46124
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    |||||| || ||| ||||||||||||| ||||| || ||||||||||| || |||| |||||| || || |||||||| |||||||||||||||||||||    
T  46020 ttgttggttgtaaccttgagcaactaaccttgctttatttctgacaactttgccatcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 46119  T
Q  203 gtttt 207  Q
    |||||    
T  46120 gtttt 46124  T

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Target: scaffold0764 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 6489 - 6580
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 208  Q
    ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  6489 cttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 6580  T

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Target: scaffold0572 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 124 - 19
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||| ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || ||  |||| |||||||||||||||||||||    
T  124 ttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcttgaaaacccatcttgttccaatgatg 25  T
Q  203 gttttg 208  Q
    ||||||    
T  24 gttttg 19  T

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Target: scaffold0142 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 32516 - 32613
Alignment:
Q  117 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 214  Q
    ||||||||||||| ||||| ||  |||||||||||||||| | ||||||  |||| |||||||| || |||||||||||||||||||||||| |||||    
T  32516 cttgagcaactaaccttgcttttcttctgacaaccttaccttcttcatcatgtttgtttctgaaaactcatcttgttccaatgatggttttgccttga 32613  T

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Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 285
Target Start/End: Complemental strand, 153283 - 153135
Alignment:
Q  137 ttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaattccaga 236  Q
    |||||||||| ||||||||| | |||||| || || ||||| || |||||||||||||||||||||||||||  ||||   | ||  || |||||||| |    
T  153283 ttgtttctgataaccttaccttcttcatcaagcttgtttcttaaaacccatcttgttccaatgatggttttgctttgattatttgtaactaaattccaaa 153184  T
Q  237 ctttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 285  Q
    ||||||| |  ||| |||||||||| |||||  ||||||| ||||||||    
T  153183 ctttgtttcgttcaaattgagaaagttcttccttcatggcctcaatcca 153135  T

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Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 99976 - 100076
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  99976 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 100075  T
Q  203 g 203  Q
    |    
T  100076 g 100076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 86473 - 86433
Alignment:
Q  50 tcacacattttttcatttgtagatccaaagatgatatcatc 90  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  86473 tcacacattttttcatttgtagctccaaaaatgatatcatc 86433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 261180 - 261085
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 198  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  261180 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 261085  T

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Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 263483 - 263388
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 198  Q
    ||||||||| ||  |||| ||||||||||| |  || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  263483 ttgttgattgtagccttgtgcaactaatctggttttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 263388  T

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Target: scaffold0010; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 261589 - 261539
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatcaaaataga 98  Q
    ||||||||||||||||||||||||||||||| || || ||||||| |||||    
T  261589 cttcacacattttttcatttgtagatccaaaaataatgtcatcaacataga 261539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 263892 - 263842
Alignment:
Q  48 cttcacacattttttcatttgtagatccaaagatgatatcatcaaaataga 98  Q
    |||||||||||||||||||||| |||||||| || || ||||||| |||||    
T  263892 cttcacacattttttcatttgtggatccaaaaataatgtcatcaacataga 263842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 6994 - 6894
Alignment:
Q  103 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 202  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || | |||||||||||||||||||    
T  6994 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatatccatcttgttccaatgatg 6895  T
Q  203 g 203  Q
    |    
T  6894 g 6894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 167546 - 167490
Alignment:
Q  160 ttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 216  Q
    |||||||||||| ||||| || |||||||||||||||||||| ||||  ||||||||    
T  167546 ttcatctagtttgtttctaaaaacccatcttgttccaatgattgtttgatcttgagg 167490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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