View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0719_low_41 (Length: 255)
Name: NF0719_low_41
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 15192652 - 15192813
Alignment:
| Q |
1 |
ttctcctgcaggacactggtgttcattaccaataaatgctgtgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgcaggagacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15192652 |
ttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgcaggagacgg |
15192751 |
T |
|
| Q |
101 |
gcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacatt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15192752 |
gcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacatt |
15192813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 15201848 - 15202006
Alignment:
| Q |
74 |
gatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacattctctcgcagga |
173 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
15201848 |
gatttaatgttctctcgcaggacacgggtgttcattaccattaaatgctatgaattctttgatattcttcttgttctagatttaacattctct--caaga |
15201945 |
T |
|
| Q |
174 |
caccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg |
234 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15201946 |
cacggacatttcattaccattaaatgctttgaaatccttgaaaatctttcttctgatgatg |
15202006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 15192814 - 15192910
Alignment:
| Q |
138 |
ttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15192814 |
ttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg |
15192910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 15212739 - 15212908
Alignment:
| Q |
65 |
cttgttctagatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattctt-cttgttctagatttaacattc |
163 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||| |||| | | || |||||||||||||||| ||| |
|
|
| T |
15212739 |
cttgttctagatttaatgttctctttcaggacacgggttttcattatcattaaatgctatgaaatccttgagaatatttcttgttctagatttaatgttc |
15212838 |
T |
|
| Q |
164 |
tctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg |
234 |
Q |
| |
|
||||||||| ||| ||| || |||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
15212839 |
tctcgcaggtcacaggcgtt-cattaccattaaatgctttgaaatccttgataatctttcttctaatgatg |
15212908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 15212765 - 15212895
Alignment:
| Q |
9 |
caggacactggtgttcattaccaataaatgctgtgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgcaggagacgggcgttcat |
108 |
Q |
| |
|
|||||||| ||| ||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15212765 |
caggacacgggttttcattatcattaaatgctatgaaatccttgagaatatttct---tgttctagatttaatgttctctcgcaggtcacaggcgttcat |
15212861 |
T |
|
| Q |
109 |
taccattaaatgctatgaaatctttgatattctt |
142 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||| |
|
|
| T |
15212862 |
taccattaaatgctttgaaatccttgataatctt |
15212895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 15192635 - 15192786
Alignment:
| Q |
66 |
ttgttctagatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgata----ttcttcttgttctagatttaacat |
161 |
Q |
| |
|
||||||||||||||| |||||| |||||| || || ||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||| | |
|
|
| T |
15192635 |
ttgttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgt |
15192734 |
T |
|
| Q |
162 |
tctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttga |
214 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
15192735 |
tctctcgcaggagacgggc-gttcattaccattaaatgctatgaaatctttga |
15192786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 15192813 - 15192890
Alignment:
| Q |
59 |
tttcttcttgttctagatttaatgttctctcgcaggagacgggc-gttcattaccattaaatgctatgaaatctttga |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
15192813 |
tttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttga |
15192890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 15192635 - 15192717
Alignment:
| Q |
144 |
ttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttct |
227 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| || || |||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
15192635 |
ttgttctagatttaacgttctcctgcaggacactggtgtt-cattaccaataaatgctatgaaatccttgagaatatttcttct |
15192717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 15201864 - 15201986
Alignment:
| Q |
8 |
gcaggacactggtgttcattaccaataaatgctgtgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgcaggagacgggc-gttc |
106 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||| || |||| | ||||||||||||||||||||| |||||| || || |||| | ||| |
|
|
| T |
15201864 |
gcaggacacgggtgttcattaccattaaatgctatgaattctttgata----ttcttcttgttctagatttaacattctct--caagacacggacatttc |
15201957 |
T |
|
| Q |
107 |
attaccattaaatgctatgaaatctttga |
135 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |
|
|
| T |
15201958 |
attaccattaaatgctttgaaatccttga |
15201986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 15192859 - 15192903
Alignment:
| Q |
22 |
ttcattaccaataaatgctgtgaaatccttgagaatatttcttct |
66 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
15192859 |
ttcattaccattaaatgctttgaaatccttgagaatctttcttct |
15192903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15212843 - 15212901
Alignment:
| Q |
8 |
gcaggacactggtgttcattaccaataaatgctgtgaaatccttgagaatatttcttct |
66 |
Q |
| |
|
||||| ||| || ||||||||||| |||||||| |||||||||||| ||| |||||||| |
|
|
| T |
15212843 |
gcaggtcacaggcgttcattaccattaaatgctttgaaatccttgataatctttcttct |
15212901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 15201955 - 15201999
Alignment:
| Q |
22 |
ttcattaccaataaatgctgtgaaatccttgagaatatttcttct |
66 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||| |||||||| |
|
|
| T |
15201955 |
ttcattaccattaaatgctttgaaatccttgaaaatctttcttct |
15201999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 245 times since January 2019
Visitors: 4374