View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_42 (Length: 255)
Name: NF0719_low_42
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_42 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 45179402 - 45179180
Alignment:
| Q |
32 |
acctccagggtataatgtgacagatgctaaaacgtcaggcgtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgc |
131 |
Q |
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| T |
45179402 |
acctccagggtataatgtgacagatgctaaaacgtcaggcgtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgc |
45179303 |
T |
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| Q |
132 |
cagcattagtgcttcaaagagtatagaagtgaaaagaagtaaagatccagtgtcaagtgagtagttcttagcttaagttatgaaatattaagtatatccg |
231 |
Q |
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| T |
45179302 |
cagctaatgtgcttcaaagagtatagaagtgaaaagaagtaaagatccagtgtcaagtgagtagttcttagcttaagttatgaaatattaagtatatccg |
45179203 |
T |
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| Q |
232 |
aaagttagttgcaatattgtgttg |
255 |
Q |
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| T |
45179202 |
-aagttagttgcaatattgtgttg |
45179180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 45172582 - 45172438
Alignment:
| Q |
33 |
cctccagggtataatgtgacagatgctaaaacgtcaggcgtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgcc |
132 |
Q |
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| T |
45172582 |
cctccaggttctaatgtgacagatgctgaaaactcaggcgctca----aaatggactcgcaaagccaaactacagtccacgtagcttgttgaagagtgcc |
45172487 |
T |
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| Q |
133 |
agcattagtgcttcaaagagtatagaagtgaaaagaagtaaagatccag |
181 |
Q |
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| T |
45172486 |
agcattagtgcttcaaagtgtatagatgtgaaaggaagtaaagatccag |
45172438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 29958484 - 29958426
Alignment:
| Q |
121 |
ttgaagagtgccagcattagtgcttcaaagagtatagaagtgaaaagaagtaaagatcc |
179 |
Q |
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| T |
29958484 |
ttgaagagtgccagcattagtggttcaaaatgtatagatgtcaaaaaaagtaaagatcc |
29958426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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