View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_6 (Length: 469)
Name: NF0719_low_6
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 110 - 448
Target Start/End: Original strand, 41200677 - 41201011
Alignment:
| Q |
110 |
agtgtaacactccaaaatttatccgtgtatccttccttatgctcaattttgaagggattgttgaagtgtataggttcatctgccttacaattaattattt |
209 |
Q |
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| T |
41200677 |
agtgtaacactccataatttatccatgtatcct----tatgctcaattttgaagggagtgttgaagtgtataggttcatctgccttacaattaattatta |
41200772 |
T |
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| Q |
210 |
ataacaagcttaaagtaccttaatgtgtgagaaaaagcacattatgttcccttcgtgtattcaaagttgaaaactgtgaacgcgaagttagcgcgttttc |
309 |
Q |
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| T |
41200773 |
ataacaagcttaaagtaccttaatgtgtgagaaaaagcacattatgttcccttcgtgtattcaaagttgaaaactgtgaacgccaagttagcgtgttttc |
41200872 |
T |
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| Q |
310 |
aaacttgtgttatttgtacttcgtatgcacggcatggagtgtttgtgcgtgaaagtatcatgttttgagcacttgcctcatctttacaacattgaagctt |
409 |
Q |
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| T |
41200873 |
aaacttgtgttatttgtacttcgtatgcacggcatggagtgtttgtgcgtgaaagtatcatgttttgagcacttgcctcatcttttcaacattgaagctt |
41200972 |
T |
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| Q |
410 |
tttgaggtgatccttgcctcttgtgaacctttgatgatg |
448 |
Q |
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| T |
41200973 |
tttgaggtgatccttgcctcttgtgaacctttgatgatg |
41201011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 41200692 - 41200742
Alignment:
| Q |
65 |
aatttatccatgtatccttatgctcaattttgaagggagtgttgaagtgta |
115 |
Q |
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| T |
41200692 |
aatttatccatgtatccttatgctcaattttgaagggagtgttgaagtgta |
41200742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 41200598 - 41200639
Alignment:
| Q |
22 |
catcatctccaacaactcctctgattacaagacaacctacca |
63 |
Q |
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| T |
41200598 |
catcatctccaacaactcctctgattacaagacaacctacca |
41200639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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