View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_7 (Length: 449)
Name: NF0719_low_7
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 35720683 - 35720320
Alignment:
| Q |
13 |
aatatactactttgttatttcactcnnnnnnnnagcgttgactatcaggttcgtaggggaataggtgttagtaatatgaagttcgg-cagtgatgtaaag |
111 |
Q |
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| T |
35720683 |
aatatactactttgttatttcactcttttttttagcgttgactctcaggttcttaggtgaataggtgttagtaatatgaagttcgggcactgatgtaaag |
35720584 |
T |
|
| Q |
112 |
atagtttgaccaaaaattgtt----------attaaactcagattcttttaaattattcttt-tttaaagaagttcattaaccatttgaacttaattgtt |
200 |
Q |
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| T |
35720583 |
atagtttgaccaagaattgtttcacccataaattaaactcagattcttctaaattattctttctttaaggaagttcattaaccatttgaactcaattgtt |
35720484 |
T |
|
| Q |
201 |
tagtttatgacactccaacttttgttactaatagnnnnnnnnagcacttttgcaactgataatgaagttgtgacgttgaaagatggagggctcccgtagg |
300 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35720483 |
tagtttatgacactcca-cttttgttactaatagttttttttagcacgtttgcaactgataatgaagttgtgacgttgaaagatggagggctcccatagg |
35720385 |
T |
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| Q |
301 |
gtcagacactatatatatgtccattgaactcttaatttatgttacataaacttttgattcaaatg |
365 |
Q |
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| T |
35720384 |
gccagacactatatatatgtccattgaactcttaatttatgttacataaacttttgattcaaatg |
35720320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 35720323 - 35720287
Alignment:
| Q |
384 |
aatgattaagatcattgaaaacgttaacgttaattat |
420 |
Q |
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| T |
35720323 |
aatgattaagatcattgaaaacgttaacgttaattat |
35720287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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