View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_8 (Length: 436)
Name: NF0719_low_8
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_8 |
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| [»] scaffold0795 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 17873005 - 17872651
Alignment:
| Q |
1 |
ttagtatctatatattgaattgtagaaacctctcatcttcacttcccaacttcatctcatatacactcttttcatcttcaaattctatagctccaatacc |
100 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17873005 |
ttagtatctatatattgcattgtacaaacctctcatcttcacttcacaacttcatctcatatac--tcttttcatcttcaaattctatagctccaatacc |
17872908 |
T |
|
| Q |
101 |
ctagctcttcttttaaattttaaccaacaattctgatttattggttatcaaaaagcattattgaaaatgatggtaagaactagatccttgtccattctct |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17872907 |
ttagctcttctttaaaattttaaccaacaattctgatttattggttatcaaaaagctttattgaaaatgatggtaagaactagatccttgtccattctct |
17872808 |
T |
|
| Q |
201 |
ctttcactattaattttttctttgcattgaatctaaagatcttttgctctgttttgttacagaaactagtattgaaggtggatatccatgatgacagaac |
300 |
Q |
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|| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
17872807 |
ctctcactaataattttttcttagcattgaatctaaagatcttttattctgttttgttgcagaaactagtattgaaggtggatatatatgatgacagaac |
17872708 |
T |
|
| Q |
301 |
caagcaaaaagctatgaagacagtctctggcctttcaggtaatgccaacgtacatgt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17872707 |
caagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgt |
17872651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 81 - 357
Target Start/End: Complemental strand, 17862352 - 17862076
Alignment:
| Q |
81 |
aattctatagctccaataccctagctcttcttttaaattttaaccaacaattctgatttattggttatcaaaaagcattattgaaaatgatggtaagaac |
180 |
Q |
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| T |
17862352 |
aattctatagctccaataccttagctcttctttaaaattttaaccaacaattctgatttattggttatcaaaaagctttattgaaaatgatggtaagaac |
17862253 |
T |
|
| Q |
181 |
tagatccttgtccattctctctttcactattaattttttctttgcattgaatctaaagatcttttgctctgttttgttacagaaactagtattgaaggtg |
280 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
17862252 |
tagatccttgtccattctctctctcactattaattttttctttgcattgaatctaaagatattttgttctgttttgttacagaaactagtattgaaggtg |
17862153 |
T |
|
| Q |
281 |
gatatccatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgccaacgtacatgt |
357 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
17862152 |
gatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaatgtacatgt |
17862076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17862416 - 17862368
Alignment:
| Q |
1 |
ttagtatctatatattgaattgtagaaacctctcatcttcacttcccaa |
49 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
17862416 |
ttagtatctatatattgcattgtacaaacctctcatcttcacttcacaa |
17862368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 17995505 - 17995587
Alignment:
| Q |
259 |
acagaaactagtattgaaggtggatatccatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
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|||||||||||| || ||||| ||| || ||||||| |||| |||||||||||| |||||| | || ||||| || ||||||| |
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| T |
17995505 |
acagaaactagtgttaaaggtagatctctatgatgatagaatcaagcaaaaagccatgaaggcggtatctggtctctcaggta |
17995587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 18000061 - 18000143
Alignment:
| Q |
259 |
acagaaactagtattgaaggtggatatccatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
| |
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|||||||||||| || ||||| ||| || ||||||| |||| |||||||||||| ||||||| || ||||| || ||||||| |
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| T |
18000061 |
acagaaactagtgttaaaggtagatctctatgatgatagaatcaagcaaaaagccatgaagatggtatctggtctctcaggta |
18000143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 45036382 - 45036293
Alignment:
| Q |
252 |
ttttgttacagaaactagtattgaaggtggatatccatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
| |
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|||||||||||||| | || || ||| |||| || |||| |||| || |||||||||||||||||| ||||||||||||||||||||| |
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| T |
45036382 |
ttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
45036293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 45041624 - 45041579
Alignment:
| Q |
296 |
agaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
45041624 |
agaatcaagcaaaaggctatgaaggcagtctctggcctttcaggta |
45041579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 45043707 - 45043653
Alignment:
| Q |
287 |
catgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
| |
|
||||| |||| || ||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
45043707 |
catgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttccggta |
45043653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 46175794 - 46175757
Alignment:
| Q |
305 |
caaaaagctatgaagacagtctctggcctttcaggtaa |
342 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
46175794 |
caaaaagctatgaaggcagtctctggcctctcaggtaa |
46175757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 11390367 - 11390449
Alignment:
| Q |
259 |
acagaaactagtattgaaggtggatatccatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
| |
|
||||||| |||| ||||||||||| | || |||| |||| ||||||||||| |||||||||||| ||| |||||||||||| |
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| T |
11390367 |
acagaaagtagtgttgaaggtggacttttataatgatagaatcaagcaaaaagttatgaagacagtatctagcctttcaggta |
11390449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0795 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0795
Description:
Target: scaffold0795; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 3697 - 3644
Alignment:
| Q |
288 |
atgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
341 |
Q |
| |
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||||||| |||| |||| ||||||| ||||||||||| ||||| |||||||||| |
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| T |
3697 |
atgatgatagaatcaagaaaaaagccatgaagacagtatctggtctttcaggta |
3644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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