View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0719_low_9 (Length: 433)
Name: NF0719_low_9
Description: NF0719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0719_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 52445741 - 52446020
Alignment:
| Q |
32 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
131 |
Q |
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| T |
52445741 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
52445840 |
T |
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| Q |
132 |
acaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccgtgacacgtatgatgatgttgatgtttgatt |
231 |
Q |
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| T |
52445841 |
aaaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccctgacacgtatgatgatgttgatgtttgatt |
52445940 |
T |
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| Q |
232 |
tactcttcatgacttcatgtgttgttgtataatgctttggttgagttgatgctctgttcacaatcataatgtatagttatgatgatgt |
319 |
Q |
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| T |
52445941 |
tact--------cttcatgtgttgttgtataatgctttggtcgagttgatactctgttcacaatcataatgtatagttgtgttgatgt |
52446020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 52447657 - 52447786
Alignment:
| Q |
37 |
aattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaag |
136 |
Q |
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| T |
52447657 |
aattaaattcatattaatacacatcttatcctttaattgaatttcaacatgtttaatttcttcatacaaacttttaagcactagcacatttgtctacaag |
52447756 |
T |
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| Q |
137 |
ttttaactaaacatgtaaaaatatcaaaat |
166 |
Q |
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| T |
52447757 |
tttgaactaaacatgtaaaaatatcaaaat |
52447786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 319
Target Start/End: Original strand, 52446722 - 52446960
Alignment:
| Q |
83 |
atatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctc |
182 |
Q |
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||||||||||||| ||| |||||| |||| || ||||||| || ||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| |
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| T |
52446722 |
atatgtttaatttattcatacaaattattaagcactaacatatctgtctacaagttttaggtaaacatgtaaaaatattgaaatctctaggtcggacctc |
52446821 |
T |
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| Q |
183 |
atgatatgagtttgaaccgtgacac----------gtatgatgatgttgatgtttgatttactcttcatgacttcatgtgttgttgtataatgctttggt |
272 |
Q |
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| T |
52446822 |
atgatatgagtttgaaccttgatacgttcacttatgtacgatgatattgatgtttgatttact--------ctccgtgtgttgttgtataatgcttcaat |
52446913 |
T |
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| Q |
273 |
tgagttgatgctctgttcacaatcataatgtatagttatgatgatgt |
319 |
Q |
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| T |
52446914 |
tgagttgatgctctatccacaatcgtaatgtatggttatgttgatgt |
52446960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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