View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0720-INSERTION-1 (Length: 571)
Name: NF0720-INSERTION-1
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720-INSERTION-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 7 - 571
Target Start/End: Complemental strand, 18260313 - 18259748
Alignment:
| Q |
7 |
atattcctaatccaagtgaagttaaaaatgctattttttatttgaatcatgatggtgcaccagggcctcatgg-tttggtgcttgctttttccaaaccta |
105 |
Q |
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| T |
18260313 |
atattcctaatccaagtgaagttaaaaatgctattttttatttgaatcatgatggtgcaccagggcctcatgggtttggtgcttgctttttccaaaccta |
18260214 |
T |
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| Q |
106 |
ttgggatatagttcagaaagatgtgtatgaagctgtggttgaattcttcaagactggatcgctccttcccaactacaatgcaaactctcttatcttgatc |
205 |
Q |
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| T |
18260213 |
ttggaatatagttaagaaagatgtgtatgaagctgtggtagaattcttcaagactggatggctccttcccaactacaatgcaaactctcttatcttgatc |
18260114 |
T |
|
| Q |
206 |
cctaaaactccagatgctaacaccatagacaagtttagaccaattgctttagcaaatttcaaattcaagattgtcactaaagttcatgcagacaggttag |
305 |
Q |
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| T |
18260113 |
cctaaaactccatatgctgacaccatatacaagtttagaccaattgctttagcaaatttcaaattcaagattgtcactaaagttcatgcagacaggttag |
18260014 |
T |
|
| Q |
306 |
caactatcctcccttccattatttcagatgaacaaaaaggctttataatgggaagaaacattagagaccgtatcattctggctatagaagctgtaaatgt |
405 |
Q |
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| T |
18260013 |
caactatcctcccttccattatttcagacgaacaaaaaggctttataatgggaagaaacattagagaccgtatcattctgcctttagaagctgtaaatgt |
18259914 |
T |
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| Q |
406 |
ccttgataaaagaagctttggtggaaacttagcccttaaaaaggatgtatcaaaagcttttgatacattaaattgggactttttgattactgttttacag |
505 |
Q |
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| T |
18259913 |
ccttgataaaagaagctttggtggaaacttagaccttaaaaaggatgtatcaaaagcttttgatacattaaattgggactttttgattattgttttacat |
18259814 |
T |
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| Q |
506 |
aaatttggtttcaatgccacattttgcaattggataaaagctattttactatcagcaacaatatca |
571 |
Q |
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| T |
18259813 |
aaatttggtttcaatgccacattttgcaattggataaaagctattttactatcagcaacaatatca |
18259748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 28186968 - 28186910
Alignment:
| Q |
242 |
agaccaattgctttagcaaatttcaaattcaagattgtcactaaagttcatgcagacag |
300 |
Q |
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| T |
28186968 |
agaccaattgctttagcaaatttcaagttcaagattatctctaaaattctagcagacag |
28186910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 16475207 - 16475149
Alignment:
| Q |
242 |
agaccaattgctttagcaaatttcaaattcaagattgtcactaaagttcatgcagacag |
300 |
Q |
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| T |
16475207 |
agaccaattgctttagcaaacttcaaattcaagattatttctgaagttcttgcagacag |
16475149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 7573260 - 7573304
Alignment:
| Q |
242 |
agaccaattgctttagcaaatttcaaattcaagattgtcactaaa |
286 |
Q |
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| T |
7573260 |
agaccaattgctttagcaaatttcaagttcaagattatctctaaa |
7573304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 22819601 - 22819659
Alignment:
| Q |
434 |
ttagcccttaaaaaggatgtatcaaaagcttttgatacattaaattgggactttttgat |
492 |
Q |
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| T |
22819601 |
ttagctcttaaaattgatgtttcaaaagcttttgatacattaagatgggattttttgat |
22819659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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