View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0720-INSERTION-2 (Length: 660)
Name: NF0720-INSERTION-2
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720-INSERTION-2 |
 | |
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| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0428 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 621; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 660
Target Start/End: Original strand, 894960 - 895612
Alignment:
| Q |
8 |
ataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatctttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894960 |
ataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatctttga |
895059 |
T |
|
| Q |
108 |
tatggtaagggactatactacctggaacattcacagtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcgagattcggaagagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
895060 |
tatggtaagggactatactacctggaacattcacagtttcataagctgactctaagaactctatttccgaggaaatagagtcgtcgagattcagaagagt |
895159 |
T |
|
| Q |
208 |
gagataaaatgatgttggaacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
895160 |
gagataaaatgatgttggaacagctcctgaggcatagaaaaggtaagaagacaagttaaattgtttggcaacttcatatgcatctgttgaaaatatactg |
895259 |
T |
|
| Q |
308 |
aagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcag |
407 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
895260 |
aagattaaagaaacaaggttagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcag |
895359 |
T |
|
| Q |
408 |
gatcatggctttgttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
895360 |
gatcatggctttgttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagagg |
895459 |
T |
|
| Q |
508 |
acaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggg |
607 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
895460 |
agaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggg |
895559 |
T |
|
| Q |
608 |
gaaggaaccatagcaatgcatgattttttgttcataatgtgcataaaagttga |
660 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
895560 |
gaaggaaccatagcaatgcatggttttttgttcataatgtgcataaaagttga |
895612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 660
Target Start/End: Complemental strand, 905683 - 905028
Alignment:
| Q |
8 |
ataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatctttga |
107 |
Q |
| |
|
|||| |||||||||||||| || ||||||||| || ||||||||| |||||| | || | |||||||||||||||||| | || ||||||||||||| |
|
|
| T |
905683 |
ataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatattttgtaatttacatttgatctttcacatagaattatttctggaatatctttga |
905584 |
T |
|
| Q |
108 |
tatggtaagggactatactacctggaacattcacagtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcgagattcggaagagt |
207 |
Q |
| |
|
|||| | |||| | || |||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
905583 |
tatgaaatgggatgacacaacctggaatattcacagtttcataagctgattctaagaattctgcttcagaggaaacagagtcgtcgagattcggaagagt |
905484 |
T |
|
| Q |
208 |
gagataaaatgatgttggaacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactg |
307 |
Q |
| |
|
|||| | ||||| || || ||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||| |||| || |
|
|
| T |
905483 |
gagaaagaatgacaatgaaagagcacccgaggcatagaaaaggtaagaagataaattgaattgtttagcaacttcatgtgcatcggttgagaatagacca |
905384 |
T |
|
| Q |
308 |
aagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcag |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
905383 |
aagattaaagaaacaaggttagttttggaaatgagtgattttacttcttcttgtagaaatggaatagaatgtttcacaatgagtttcatttgtgttgcag |
905284 |
T |
|
| Q |
408 |
gatc---atggctttgttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaag |
504 |
Q |
| |
|
| || || | | | ||| | ||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
905283 |
gttcaagattaatctctggaaggtgttttacttgaggaagaacaatgaattctatgtttgggggaagagtgttcaagacttgttgcattgaaggagtaag |
905184 |
T |
|
| Q |
505 |
aggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtcca |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
905183 |
aggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgttgttgaagtaattgtttggcaaattcaacttgtggaattaaatggctaagtcca |
905084 |
T |
|
| Q |
605 |
ggggaaggaaccatagcaatgcatgattttttgttcataatgtgcataaaagttga |
660 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||| ||||| ||| ||||||| |
|
|
| T |
905083 |
ggggaaggaaccatagcaatgtatgtttttttattcatgatgtgtatagaagttga |
905028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 226 - 629
Target Start/End: Original strand, 8295121 - 8295530
Alignment:
| Q |
226 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
325 |
Q |
| |
|
||||||||| |||| | |||||||||| || | | |||||| ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |
|
|
| T |
8295121 |
aacagctcctgaggaaaagaaaaggtatgataaaaggttgaaatgtttcgcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactagg |
8295220 |
T |
|
| Q |
326 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
425 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| | ||||||||||||||| |||||||| ||||||||||| |||| |||||||||| | | ||| ||| |
|
|
| T |
8295221 |
cgagtttttgaaaggagtgattttacttcttcataaagaaatggaatagagtgtttcactatgagtttcatctgtgttgcaggatcaagattatgtggaa |
8295320 |
T |
|
| Q |
426 |
tatttt------ttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgg |
519 |
Q |
| |
|
| || | ||||| ||||||| |||||||| ||||||||||||||| ||||||||| |||||| |||||||| || |||| |||||| || |
|
|
| T |
8295321 |
ggtcttcaatgttgacttggggaagaacaatgaagttcatgtttggtggaagagtgttcaagatggattgcatggaaggagttagtggaccaagtgtggg |
8295420 |
T |
|
| Q |
520 |
aatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccata |
619 |
Q |
| |
|
||||| |||||||| | | |||||||||||| ||| |||||| |||| ||||| |||||| ||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
8295421 |
aatgaggaatgtgatatggtattcattgtgattttggagtaatagtttagcaaactcaactagtggaatcaaatggctcaatccaggtgaaggaaccata |
8295520 |
T |
|
| Q |
620 |
gcaatgcatg |
629 |
Q |
| |
|
|||||||||| |
|
|
| T |
8295521 |
gcaatgcatg |
8295530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 226 - 629
Target Start/End: Complemental strand, 33256634 - 33256225
Alignment:
| Q |
226 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
325 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
|
|
| T |
33256634 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
33256535 |
T |
|
| Q |
326 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
425 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| || ||| ||| | | ||| ||| |
|
|
| T |
33256534 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtgttgaaggttcaagattatgtggaa |
33256435 |
T |
|
| Q |
426 |
tatttt------ttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgg |
519 |
Q |
| |
|
| || | ||||| ||||||| | |||||| |||||||||||||| ||||||||| | |||||| |||||||| || |||| |||||| || |
|
|
| T |
33256434 |
ggtcttcaatgttgacttggggaagaacagtgaagttcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtggg |
33256335 |
T |
|
| Q |
520 |
aatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccata |
619 |
Q |
| |
|
||||| |||||||| | | | |||||||||||||| |||||| |||| ||||| |||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
33256334 |
aatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaactcaacttgtggaatcaaatggctcaatccaggtgaaggaaccata |
33256235 |
T |
|
| Q |
620 |
gcaatgcatg |
629 |
Q |
| |
|
|||||||||| |
|
|
| T |
33256234 |
gcaatgcatg |
33256225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 8294908 - 8294982
Alignment:
| Q |
7 |
aataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcaca |
81 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
8294908 |
aataacaccatcaaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcaca |
8294982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 549
Target Start/End: Complemental strand, 6440567 - 6440492
Alignment:
| Q |
474 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
549 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||| ||| || |||||||| || ||||||||||||||| |||||||| |
|
|
| T |
6440567 |
tgttcaatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtg |
6440492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 33256846 - 33256794
Alignment:
| Q |
8 |
ataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgta |
60 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
33256846 |
ataacaccatcaaacaatgacgatttttgacacacatcaaggattgatttgta |
33256794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 226 - 629
Target Start/End: Complemental strand, 752 - 343
Alignment:
| Q |
226 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
325 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
|
|
| T |
752 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
653 |
T |
|
| Q |
326 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
425 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| || ||| ||| | | ||| ||| |
|
|
| T |
652 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtgttgaaggttcaagattatgtggaa |
553 |
T |
|
| Q |
426 |
tatttt------ttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttgg |
519 |
Q |
| |
|
| || | ||||| ||||||| | |||||| |||||||||||||| ||||||||| | |||||| |||||||| || |||| |||||| || |
|
|
| T |
552 |
ggtcttcaatgttgacttggggaagaacagtgaagttcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtggg |
453 |
T |
|
| Q |
520 |
aatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccata |
619 |
Q |
| |
|
||||| |||||||| | | | |||||||||||||| |||||| |||| ||||| |||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
452 |
aatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaactcaacttgtggaatcaaatggctcaatccaggtgaaggaaccata |
353 |
T |
|
| Q |
620 |
gcaatgcatg |
629 |
Q |
| |
|
|||||||||| |
|
|
| T |
352 |
gcaatgcatg |
343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 964 - 912
Alignment:
| Q |
8 |
ataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgta |
60 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
964 |
ataacaccatcaaacaatgacgatttttgacacacatcaaggattgatttgta |
912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 549
Target Start/End: Original strand, 34765242 - 34765317
Alignment:
| Q |
474 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
549 |
Q |
| |
|
|||||||| ||| ||||||||| |||| |||||| ||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
34765242 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtg |
34765317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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