View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0720-INSERTION-5 (Length: 509)
Name: NF0720-INSERTION-5
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720-INSERTION-5 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 3101321 - 3101668
Alignment:
| Q |
7 |
aaaacataaaccccattttgggagaaattttagcatttaaaggagtcaatcaatttgatcaccgcatgatggagcaaatcgctaagcttaggacgctaaa |
106 |
Q |
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| T |
3101321 |
aaaacataaaccccattttgggagaaattttagcatttaaagtagtcaatcaatttgatcaccacatgatggagcaaatcgctaagcttaggacgctaaa |
3101420 |
T |
|
| Q |
107 |
gaaacatttgatggaagacaaaccattttaaatagtactctatcannnnnnnnnnnnnnnnngatgtttttgttggtgaatatccttactttggagtagc |
206 |
Q |
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| T |
3101421 |
gaaacatttgatggaagacaaaccattttaaatagtactctatcattttttttttttttt--gatgtttttgttggtgaatatccttactttggagtagc |
3101518 |
T |
|
| Q |
207 |
aagacgagtctaaccatcttaactgtcaacattaactcgtctaaagtgtgatgggacaacacgagctataaagttgaaaaccttatacgtccctttttat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3101519 |
aagacgagtctaaccatcttaactgtcaacattaactcgtctaaagtgtgatgggacaacacgagctataaagttgaaaaccttatacgtccctttttat |
3101618 |
T |
|
| Q |
307 |
gatgaatcnnnnnnnnnnnnnacaggggacgagcttgacatgtcaattttat |
358 |
Q |
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| T |
3101619 |
gatgaatcttatttttttt--acaggggacgagcttgacatgtcaattttat |
3101668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 392 - 504
Target Start/End: Original strand, 3101703 - 3101813
Alignment:
| Q |
392 |
ggaatctatactaaattatgggattactattttcactttcatttatatctataaactaattttgtctacagaaaatgatatattatcgatgtcattgaaa |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
3101703 |
ggaatctatactaaattatgggattactattttcactttcatttatatctataaactaattttgtctacag-aaatgatatattatcgatgtcattg-aa |
3101800 |
T |
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| Q |
492 |
aatatcgtttatc |
504 |
Q |
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||||||||||||| |
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| T |
3101801 |
aatatcgtttatc |
3101813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 3097460 - 3097553
Alignment:
| Q |
34 |
ttttagcatttaaaggagtcaatcaatttgatcaccgcatgatggagcaaatcgctaagcttaggacgctaaagaaacatttgatggaagacaa |
127 |
Q |
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|||||||| | ||| ||||| |||||||| | |||| | ||||||||||||||| |||||| | |||| | || |||| ||||||||||||||| |
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| T |
3097460 |
ttttagcactcaaaagagtccatcaattttaccaccacgtgatggagcaaatcgttaagctcaagacgttgaaaaaacgtttgatggaagacaa |
3097553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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