View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0720-INSERTION-9 (Length: 155)

Name: NF0720-INSERTION-9
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0720-INSERTION-9
NF0720-INSERTION-9
[»] chr5 (4 HSPs)
chr5 (9-155)||(40461900-40462046)
chr5 (14-90)||(40378759-40378835)
chr5 (47-145)||(21300940-21301035)
chr5 (23-141)||(137330-137445)
[»] chr8 (5 HSPs)
chr8 (23-145)||(18803026-18803145)
chr8 (42-145)||(15334106-15334206)
chr8 (42-145)||(15423202-15423302)
chr8 (42-145)||(15514475-15514575)
chr8 (23-141)||(14979725-14979843)
[»] chr4 (2 HSPs)
chr4 (47-146)||(4104363-4104459)
chr4 (42-145)||(35185485-35185586)
[»] chr6 (3 HSPs)
chr6 (26-141)||(12354278-12354393)
chr6 (47-109)||(2068866-2068928)
chr6 (23-145)||(14963655-14963772)
[»] chr7 (2 HSPs)
chr7 (47-109)||(20656579-20656641)
chr7 (42-145)||(48631239-48631339)
[»] scaffold0464 (1 HSPs)
scaffold0464 (42-145)||(3897-3997)
[»] chr1 (1 HSPs)
chr1 (23-138)||(1394086-1394199)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 5e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 40462046 - 40461900
Alignment:
Q  9 agggcttgatattgctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtcta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40462046 agggcttgatattgctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtcaa 40461947  T
Q  109 gatatttctttgaggatcattgaagcaacatcactagaaaatactta 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  40461946 gatatttccttgaggatcattgaagcaacatcactagaaaatactta 40461900  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 40378759 - 40378835
Alignment:
Q  14 ttgatattgctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggta 90  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  40378759 ttgatattgctaatcattgtcttacttatttttttcttctttccagccaacaaatttagaatcagcaagagatggta 40378835  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 21301035 - 21300940
Alignment:
Q  47 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatcactag 145  Q
    ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | | ||||||||||||||||||||||||||    
T  21301035 ttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgcctggaggatcattgaagcaacatcactag 21300940  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 137330 - 137445
Alignment:
Q  23 ctaatcattatcttatttatttta-ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttga 121  Q
    ||||||||| |||| ||||||||  |||||| ||| | |||||||||||||||   ||||||||||||| | |||||||  ||||||| ||   | | ||    
T  137330 ctaatcattgtcttctttatttttcttcttcattcaa-ccaacaaatttagaa---acaagagatggtagacattcatcgaagtctagctaccgcctcga 137425  T
Q  122 ggatcattgaagcaacatca 141  Q
    ||||||||||||||||||||    
T  137426 ggatcattgaagcaacatca 137445  T

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Target: chr8 (Bit Score: 57; Significance: 4e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 18803026 - 18803145
Alignment:
Q  23 ctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgag 122  Q
    |||||||||||||| ||| |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | |||||    
T  18803026 ctaatcattatcttttttttttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgag 18803122  T
Q  123 gatcattgaagcaacatcactag 145  Q
    |||||||||||||||||||||||    
T  18803123 gatcattgaagcaacatcactag 18803145  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 15334106 - 15334206
Alignment:
Q  42 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 141  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||||||||||||||||||||||    
T  15334106 tttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatca 15334202  T
Q  142 ctag 145  Q
    ||||    
T  15334203 ctag 15334206  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 15423202 - 15423302
Alignment:
Q  42 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 141  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||||||||||||||||||||||    
T  15423202 tttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatca 15423298  T
Q  142 ctag 145  Q
    ||||    
T  15423299 ctag 15423302  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 15514475 - 15514575
Alignment:
Q  42 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 141  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||||||||||||||||||||||    
T  15514475 tttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatca 15514571  T
Q  142 ctag 145  Q
    ||||    
T  15514572 ctag 15514575  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 14979843 - 14979725
Alignment:
Q  23 ctaatcattatcttatttattttattcttctt---tccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttcttt 119  Q
    ||||||||| |||||||| |||| ||||||||   | |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||    
T  14979843 ctaatcattgtcttattttttttcttcttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgcctt 14979747  T
Q  120 gaggatcattgaagcaacatca 141  Q
    ||||||||||||||||||||||    
T  14979746 gaggatcattgaagcaacatca 14979725  T

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Target: chr4 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 4104363 - 4104459
Alignment:
Q  47 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatcactaga 146  Q
    ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | |||||||||||||||||||||||||||||    
T  4104363 ttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatcactaga 4104459  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 35185485 - 35185586
Alignment:
Q  42 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 141  Q
    |||| ||||||||| ||||||||||||||||||  || | |||||||||   ||||||| |||||||| ||   | | || |||||| ||||||||||||    
T  35185485 ttttcttcttcttttcagccaacaaatttagaa--aaaaggagatggtaggcattcatcggagtctagctaccgcctcgatgatcatcgaagcaacatca 35185582  T
Q  142 ctag 145  Q
    ||||    
T  35185583 ctag 35185586  T

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Target: chr6 (Bit Score: 45; Significance: 6e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 12354393 - 12354278
Alignment:
Q  26 atcattatcttatttatttta-ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgagga 124  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||| ||||||||||| ||| | ||||||  |||| ||| ||   | |||||||    
T  12354393 atcattgtcttatttatttttcttcttcttttcagccaacaaatttagaaacaacaagagat-gtagacattcatatgagtttagctaccgcgttgagga 12354295  T
Q  125 tcattgaagcaacatca 141  Q
    |||||||||||||||||    
T  12354294 tcattgaagcaacatca 12354278  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 2068928 - 2068866
Alignment:
Q  47 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctag 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||    
T  2068928 ttcttctttccagccaacaaatttagaatcagcaagagatggtagacattcatcttagtctag 2068866  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 14963655 - 14963772
Alignment:
Q  23 ctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgag 122  Q
    |||||||||||||||||| ||||   ||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||     
T  14963655 ctaatcattatcttattttttttc--cttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgat 14963749  T
Q  123 gatcattgaagcaacatcactag 145  Q
    ||||| |||||||||||||||||    
T  14963750 gatcactgaagcaacatcactag 14963772  T

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Target: chr7 (Bit Score: 43; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 20656579 - 20656641
Alignment:
Q  47 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctag 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||    
T  20656579 ttcttctttccagccaacaaatttagaatcagcaagagatggtagacattcatctaagtctag 20656641  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 48631239 - 48631339
Alignment:
Q  42 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 141  Q
    |||| ||||||||| ||||||||||| |||||   |||||||||||||| | ||||||| ||||||||  |   | || |||||||||||||||||||||    
T  48631239 ttttcttcttcttttcagccaacaaacttaga---aacaagagatggtagacattcatctgagtctagccaccgccttcaggatcattgaagcaacatca 48631335  T
Q  142 ctag 145  Q
    ||||    
T  48631336 ctag 48631339  T

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Target: scaffold0464 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 3897 - 3997
Alignment:
Q  42 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 141  Q
    |||| ||||||||| |||||||||||||||||   |||||||||| ||| | ||||||| ||||||||  |   | ||||||| ||||||||||||||||    
T  3897 ttttcttcttcttttcagccaacaaatttaga---aacaagagatagtagacattcatctgagtctagccaccgccttgaggaccattgaagcaacatca 3993  T
Q  142 ctag 145  Q
    ||||    
T  3994 ctag 3997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 1394086 - 1394199
Alignment:
Q  23 ctaatcattatcttatttatttta-ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttga 121  Q
    ||||||||| |||||||||||||  ||||| ||| |||||||||||||||||   |||||||||||||| | ||||||  |||||||| ||   | | ||    
T  1394086 ctaatcattgtcttatttatttttcttcttgttttcagccaacaaatttaga---aacaagagatggtagacattcataggagtctagctaccgcctcga 1394182  T
Q  122 ggatcattgaagcaaca 138  Q
    |||||||| ||||||||    
T  1394183 ggatcattaaagcaaca 1394199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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