View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0720_high_2 (Length: 327)
Name: NF0720_high_2
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 31179907 - 31180204
Alignment:
| Q |
28 |
caagctcaacatgtcaaagaatactttgtattatcataaagaataggttgattgagcagtcgagtgtggtataaataaatataaatgttgttgcttaatt |
127 |
Q |
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| T |
31179907 |
caagctcaacatgtcaaggaatactttgtattatcacatagaagaggttggttgagtagttgggtgtggtataaataaatataaatgttgttgcttaatt |
31180006 |
T |
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| Q |
128 |
ttcatcatatacatattttcatatgctcggacaattggcaagaagaccaagctcaacaccccctccatttggatgaaattcacactcatcggaataagtt |
227 |
Q |
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| T |
31180007 |
ttcatcatatactgattttcatgtgcgcggacaattgccaagaagatcaagctcaacacccccttcatttggatgaaattcacactcgttggaataattt |
31180106 |
T |
|
| Q |
228 |
gcagttcgaggatgacaatgttcataaggatagtcaggcagatatatcgcttctaccataatgggattgcgttcaggtttggtattttggctagtgat |
325 |
Q |
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| T |
31180107 |
gcagttcaaggatgacaatgttcataaggatagttaggcagatctatcgcttctaccataacgaaattccgttcaagtttggtattttggctagtgat |
31180204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 31179827 - 31179917
Alignment:
| Q |
95 |
ggtataaataaatataaatgttgttgcttaattttcatcatatacatattttcatatgctcggacaattggcaagaagaccaagctcaaca |
185 |
Q |
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| T |
31179827 |
ggtatgaataaatttaaatgtggttgtttaattttcatcacatacatatttttgtatgtgtgtacaattttcaagaagaccaagctcaaca |
31179917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 16041208 - 16041142
Alignment:
| Q |
72 |
aggttgattgagcagtcgagtgtggtataaataaatataaatgttgttgcttaattttcatcatata |
138 |
Q |
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| T |
16041208 |
aggttgatcgagcagttgggtgtggtatggataaatctaaatgtggttgcttaattttcatcatata |
16041142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 9369038 - 9368939
Alignment:
| Q |
196 |
ttggatgaaattcacactcatcggaataagttgcagttcgaggatgacaatgttcataaggatagtcaggcagatatatcgcttctaccataatgggatt |
295 |
Q |
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| T |
9369038 |
ttggatgaaatttacactcaatggaagatgatgcggttcgaggatgacagtgttcctaatgatagttaatcagatatatctcgtctaccaaaatgggatt |
9368939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 8109687 - 8109742
Alignment:
| Q |
160 |
aattggcaagaagaccaagctcaacaccccctccatttggatgaaattcacactcat |
216 |
Q |
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| T |
8109687 |
aattgccaagaagatcaag-tcaacacccccttcatttggatgaaattcaaactcat |
8109742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 15892341 - 15892374
Alignment:
| Q |
188 |
ccctccatttggatgaaattcacactcatcggaa |
221 |
Q |
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| T |
15892341 |
ccctccatttggatgaaattcacactcattggaa |
15892374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 5158554 - 5158493
Alignment:
| Q |
161 |
attggcaagaagaccaagctcaacaccccc-tccatttggatgaaattcacactcatcggaa |
221 |
Q |
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|||| |||||||| |||| |||||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
5158554 |
attgccaagaagatcaagaacaacacccccctccgtttggatgaaattcacactcaccggaa |
5158493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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