View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0720_high_3 (Length: 284)
Name: NF0720_high_3
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 226797 - 227042
Alignment:
| Q |
10 |
aataatatcacaacaattacatattatttccctgttcaatgagaagattccttgtgggctataggtctccaatctaatttttcctctccttatggccaat |
109 |
Q |
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| T |
226797 |
aataatatcacaacaattacatattatttccctgttcaatgagaagattccttgtgggctataggcctccaatctaatttttcctctccttatggccaat |
226896 |
T |
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| Q |
110 |
tcaaaaacgccggctcagtgaatgttactgttatattgcagacaggcagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctct |
209 |
Q |
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| T |
226897 |
tcaaaaacgccggctcagtgaatgttactgttatattgcagacaggcagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctct |
226996 |
T |
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| Q |
210 |
tgtaaacacaaatacgcctcctcctccaccaacagcacgacctaaa |
255 |
Q |
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| T |
226997 |
tgtaaacacaaatacgcctcctcctccaccaacagcacgacctaaa |
227042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 236486 - 236673
Alignment:
| Q |
56 |
attccttgtgggctataggtctccaatctaatttttcctctccttatggccaattcaaaaacgccggctcagtgaatgttactgttatattgcagacagg |
155 |
Q |
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| T |
236486 |
attccttgtggactacaggcctccaatctatttcttcctctccatatggccaattcctcaacgatggcttatcgagtgttactgttat--tgctgtcaaa |
236583 |
T |
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| Q |
156 |
cagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgtaaacacaaatacgcctcctcctccaccaacagcacg |
248 |
Q |
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| T |
236584 |
cagtaaaagtcttaaactactgatcaatgctcgtcagtaaagtgattgggctctcgtaaacacaaata---ctcctcctccaccaacagcacg |
236673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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