View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0720_high_4 (Length: 251)
Name: NF0720_high_4
Description: NF0720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0720_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5774530 - 5774304
Alignment:
| Q |
1 |
agctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnnttgtggaaattttgtgttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5774530 |
agctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaattttgtgttat |
5774431 |
T |
|
| Q |
101 |
ttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtgcttcatctctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5774430 |
ttagaatgtaactaatcgaatgagtaaagttatata----atagtatttcacctaggcatttgaaaaatttctgcacacacacatgtgcttcatctctga |
5774335 |
T |
|
| Q |
201 |
tttttcacctttcttctttccatgatgatgt |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
5774334 |
tttttaacctttcttctttccatgatgatgt |
5774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5768256 - 5768189
Alignment:
| Q |
4 |
tgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat |
71 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5768256 |
tgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttat |
5768189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 465750 - 465800
Alignment:
| Q |
18 |
gagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagt |
68 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
465750 |
gagaagaaaaccttgcttgagagatacactgtcaaggaaactcaggtcagt |
465800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 5768171 - 5768137
Alignment:
| Q |
92 |
ttgtgttatttagaatgtaactaatcgaatgagta |
126 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
5768171 |
ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1174 times since January 2019
Visitors: 4365